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Gene Family: Long non-coding RNAs (published)

Also known as : "lncRNAs", "long ncRNAs", "Long non coding RNAs"
A subset of : Non-coding RNAs

Long non-coding RNAs (published): This page lists the long non-coding RNA genes with approved HGNC symbols that have appeared in publications stating molecular functions or associations with human phenotypes. The full list of HGNC genes with the locus type 'RNA, long non-coding' can be accessed from our Statistics and Downloads page. [Source: [HGNC curators]]

Genes contained within the family: 385

Approved Symbol Approved Name Previous Symbols Synonyms Chromosome
AATBC apoptosis associated transcript in bladder cancer 21q22.3
ABHD11-AS1 ABHD11 antisense RNA 1 (tail to tail) WBSCR26, LINC00035 NCRNA00035 7q11.23
ADAMTS9-AS2 ADAMTS9 antisense RNA 2 3p14.1
AFAP1-AS1 AFAP1 antisense RNA 1 AFAP1AS, AFAP1-AS MGC10981 4p16.1
AIRN antisense of IGF2R non-protein coding RNA AIR, NCRNA00088, IGF2RAS, IGF2R-AS1 6q25.3
APOA1-AS APOA1 antisense RNA 11q23.3
APTR Alu-mediated CDKN1A/p21 transcriptional regulator RSBN1L-AS1 7q11.23
ARLNC1 androgen receptor regulated long noncoding RNA 1 LINC02170 PRCAT47 16q23.2
ATXN8OS ATXN8 opposite strand lncRNA SCA8, KLHL1AS NCRNA00003 13q21.33
BACE1-AS BACE1 antisense RNA BACE1AS FJ573250, NCRNA00177, BACE1-AS1 11q23.3
BANCR BRAF-activated non-protein coding RNA LINC00586 9q21.11-q21.12
BCAR4 breast cancer anti-estrogen resistance 4 16p13.13
BCYRN1 brain cytoplasmic RNA 1 BC200, BC200a, NCRNA00004, LINC00004 2p21
BDNF-AS BDNF antisense RNA BDNFOS BT2A, BT2B, BT2C, BT2D, NCRNA00049, BDNF-AS1, BDNFAS 11p14.1
BGLT3 beta globin locus transcript 3 LINC01083, BGL3, lncRNA-BGL3 11p15.4
BIRC6-AS2 BIRC6 antisense RNA 2 megamind 2p22.3
BISPR BST2 interferon stimulated positive regulator 19p13.11
BLACAT1 bladder cancer associated transcript 1 linc-UBC1, LINC00912, onco-lncRNA-30 1q32.1
BRE-AS1 BRE antisense RNA 1 2p23.2
BTG3-AS1 BTG3 antisense RNA 1 ASBEL 21q21.1
B4GALT1-AS1 B4GALT1 antisense RNA 1 9p21.1
CACNA1G-AS1 CACNA1G antisense RNA 1 CAS1 17q21.33
CAHM colon adenocarcinoma hypermethylated LINC00468 6q26
CAMTA1-DT CAMTA1 divergent transcript lncCAMTA1 1p36.31
CARMN cardiac mesoderm enhancer-associated non-coding RNA MIR143HG CARMEN 5q32
CASC2 cancer susceptibility 2 C10orf5 10q26.11
CASC8 cancer susceptibility 8 LINC00860, CARLo-1 8q24.21
CASC11 cancer susceptibility 11 TCONS_00014535, LINC00990, CARLo-7, ENST00000518376 8q24.21
CASC15 cancer susceptibility 15 LINC00340 lnc-SOX4-1 6p22.3
CASC19 cancer susceptibility 19 LINC01245 CARLo-6 8q24.21
CASC21 cancer susceptibility 21 LINC01244 CARLo-2 8q24.21
CASC22 cancer susceptibility 22 LINC01373 TCONS_00024290, LincRNA-ENST00000515084 16q12.1
CBR3-AS1 CBR3 antisense RNA 1 PlncRNA-1 21q22.12
CCAT1 colon cancer associated transcript 1 CARLo-5, onco-lncRNA-40 8q24.21
CCAT2 colon cancer associated transcript 2 NCCP1, LINC00873 8q24.21
CCND2-AS1 CCND2 antisense RNA 1 CCND2-AS2 12p13.32
CDKN2B-AS1 CDKN2B antisense RNA 1 CDKN2BAS ANRIL, RP11-145E5.4, NCRNA00089, p15AS, CDKN2B-AS, PCAT12 9p21.3
CDR1-AS CDR1 antisense RNA CDR1NAT, ciRS-7, CDR1as Xq27.1
CERNA1 competing endogenous lncRNA 1 for miR-4707-5p and miR-4767 LOC100129973 15q21.2
CERNA2 competing endogenous lncRNA 2 for microRNA let-7b HOST2 10q23.1
CERNA3 competing endogenous lncRNA 3 for miR-645 CTA 8q12.1
CFTR-AS1 CFTR antisense RNA 1 BGas 7q31.2
CISTR chondrogenesis-associated transcript CISTR-ACT, CISTRACT, re52431 12q13.13
CLMAT3 colorectal liver metastasis associated transcript 3 SPARC-AS1 5q33.1
CPS1-IT1 CPS1 intronic transcript 1 CPS1IT PRO0132, CPS1-IT 2q34
CRNDE colorectal neoplasia differentially expressed LOC643911, LINC00180, CRNDEP 16q12.2
CTBP1-AS CTBP1 antisense RNA PCAT10 4p16.3
CYP4A22-AS1 CYP4A22 antisense RNA 1 ncRNA-a3 1p33
CYTOR cytoskeleton regulator RNA C2orf59, NCRNA00152, LINC00152 MGC4677 2p11.2
CYYR1-AS1 cysteine and tyrosine rich 1 antisense RNA 1 21q21.3
DACOR1 DNMT1-associated colon cancer repressed lncRNA 1 TCONS_00023265 15q22.33
DALIR DNMT1-associated long intergenic non-coding RNA DALI 2q12
DANCR differentiation antagonizing non-protein coding RNA KIAA0114, SNHG13 ANCR, AGU2, lncRNA-ANCR 4q12
DANT1 DXZ4 associated non-coding transcript 1, proximal Xq23
DANT2 DXZ4 associated non-coding transcript 2, distal Xq23
DARS-AS1 DARS antisense RNA 1 2q21.3
DBET D4Z4 binding element transcript DBE-T, DUX4L30 4q35.2
DBH-AS1 DBH antisense RNA 1 NCRNA00118 BPR 9q34.2
DDIT4-AS1 DDIT4 antisense RNA 1 RP11-442H21.2 10q22.1
DDX11-AS1 DDX11 antisense RNA 1 CONCR, SCAT4 12p11.21
DGCR5 DiGeorge syndrome critical region gene 5 NCRNA00037, LINC00037 22q11.21
DHRS4-AS1 DHRS4 antisense RNA 1 C14orf167 PRO1488, AS1DHRS4 14q11.2
DICER1-AS1 DICER1 antisense RNA 1 DICER1-AS FLJ45244 14q32.13
DINOL damage induced long noncoding RNA DINO 6p21.2
DIO3OS DIO3 opposite strand upstream RNA C14orf134 NCRNA00041, DIO3-AS1 14q32.31
DISC2 disrupted in schizophrenia 2 DISC1-AS1, DISC1OS, NCRNA00015 1q42.1
DLEU1 deleted in lymphocytic leukemia 1 DLB1, BCMS LEU1, XTP6, NCRNA00021, LINC00021, BCMS1 13q14.2-q14.3
DLEU2 deleted in lymphocytic leukemia 2 DLB2, BCMSUN, RFP2OS LEU2, TRIM13OS, NCRNA00022, LINC00022, MIR15AHG 13q14.2
DLG2-AS1 DLG2 antisense RNA 1 DLG2AS, DLG2-AS PSZA11q14, SZ-1 11q14.1
DLX6-AS1 DLX6 antisense RNA 1 NCRNA00212 FLJ34048, Evf-2 7q21.3
DRAIC downregulated RNA in cancer, inhibitor of cell invasion and migration 15q23
DSCAM-AS1 DSCAM antisense RNA 1 M41 21q22.2
EGFLAM-AS1 EGFLAM antisense RNA 1 lncRNA-LOWEG, CTD-2108O9.1 5p13.1
EGFR-AS1 EGFR antisense RNA 1 7p11.2
EGOT eosinophil granule ontogeny transcript EGO, NCRNA00190 3p26.1
ELF3-AS1 ELF3 antisense RNA 1 ENST00000415582, SCAT7 1q32.1
EMX2OS EMX2 opposite strand/antisense RNA NCRNA00045, EMX2-AS1 10q26.11
EPB41L4A-DT EPB41L4A divergent transcript EPB41L4A-AS2 FLJ11235 5q22.2
ERICD E2F1-regulated inhibitor of cell death LINC01130 TCONS_00014875, ERIC 8q24.3
ERLNC1 estrogen receptor responsive lncRNA 1 TC0101441, ElncRNA1 1q32.1
ESRG embryonic stem cell related HESRG 3p14.3
ETS1-AS1 ETS1 antisense RNA 1 pancEts-1 11q24.3
EWSAT1 Ewing sarcoma associated transcript 1 TMEM84, NCRNA00277, LINC00277 FLJ33768 15q23
FALEC focally amplified long non-coding RNA in epithelial cancer LINC00568 ncRNA-a1, FAL1 1q21.2
FAM83H-AS1 FAM83H antisense RNA 1 (head to head) onco-lncRNA-3 8q24.3
FAS-AS1 FAS antisense RNA 1 FASAS, FAS-AS SAF 10q23.31
FBXL19-AS1 FBXL19 antisense RNA 1 NCRNA00095 MGC125469, MGC125470, MGC125472 16p11.2
FENDRR FOXF1 adjacent non-coding developmental regulatory RNA FOXF1-AS1 lincFOXF1, onco-lncRNA-21 16q24.1
FEZF1-AS1 FEZF1 antisense RNA 1 7q31.32
FGF14-AS2 FGF14 antisense RNA 2 13q33.1
FILNC1 FOXO induced long non-coding RNA 1 6q24.1
FIRRE firre intergenic repeating RNA element LINC01200 Xq26.2
FLICR FOXP3 regulating long intergenic non-coding RNA Xp11.23
FMR1-AS1 FMR1 antisense RNA 1 FMR1AS, FMR1-AS ASFMR1, FMR4 Xq27.3
FOXCUT FOXC1 upstream transcript LINC01379 TCONS_00011636 6p25.3
FOXC2-AS1 FOXC2 antisense RNA 1 ODRUL 16q24.1
FOXD2-AS1 FOXD2 adjacent opposite strand RNA 1 MGC12982 1p33
FOXD3-AS1 FOXD3 antisense RNA 1 pasFOXD3 1p31.3
FOXP4-AS1 FOXP4 antisense RNA 1 6p21.1
FRGCA FOXM1-regulated, gastric cancer associated LncRNA-AP001631.9 21q22.3
FTX FTX transcript, XIST regulator NCRNA00182, MIR374AHG LINC00182, FLJ33139 Xq13.2
GACAT1 gastric cancer associated transcript 1 LINC00876, AC096655.1-002 2q12.3
GACAT2 gastric cancer associated transcript 2 MTCL1-AS1 HMlincRNA717 18p11.22
GACAT3 gastric cancer associated transcript 3 LINC01458 lncRNA-AC130710 2p24.3
GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA LINC01540 TCONS_00026238, lncRNA-uc002kmd.1, RP11-838N2.4 18p11.31
GASAL1 growth arrest associated lncRNA 1 GASL1 8q22.3
GAS1RR GAS1 adjacent regulatory RNA LncRNA-Hh 9q21.33
GAS5 growth arrest specific 5 SNHG2, NCRNA00030 1q25.1
GAS8-AS1 GAS8 antisense RNA 1 C16orf3 16q24.3
GCASPC gall bladder cancer associated suppressor of pyruvate carboxylase lncRNA TCONS_00011605, RP1-56L9.7-001, lnc-SOD2-1 6q25.3
GHET1 gastric carcinoma proliferation enhancing transcript 1 lncRNA-GHET1 7q36.1
GHRLOS ghrelin opposite strand/antisense RNA NCRNA00068, GHRL-AS1 3p25.3
GNAS-AS1 GNAS antisense RNA 1 GNASAS, GNAS-AS SANG, NESP-AS, NESPAS, GNAS1AS, NCRNA00075 20q13.32
GNG12-AS1 GNG12, DIRAS3 and WLS antisense RNA 1 1p31.3
GPC3-AS1 GPC3 antisense RNA 1 Xq26.2
GPR1-AS GPR1 antisense RNA GPR1-AS1 GPR1AS 2q33.3
GSEC G-quadruplex forming sequence containing lncRNA ST3GAL4-AS1 DCPS-AS1, FLJ39051 11q24.2
HAGLR HOXD antisense growth-associated long non-coding RNA HOXD-AS1 Mdgt 2q31.1
HAND2-AS1 HAND2 antisense RNA 1 DEIN, NBLA00301, FLJ11539 4q34.1
HAR1A highly accelerated region 1A HAR1F, NCRNA00064, LINC00064 20q13.33
HAR1B highly accelerated region 1B HAR1R, NCRNA00065, LINC00065 20q13.33
HAS2-AS1 HAS2 antisense RNA 1 HAS2AS, HAS2-AS HASNT, NCRNA00077 8q24.13
HCG11 HLA complex group 11 bK14H9.3, FLJ14049, FLJ30357 6p22.2
HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA LINC-HEIH, lncRNA-HEIH, LINC00848, HCCAT2 5q35.3
HIF1A-AS1 HIF1A antisense RNA 1 5'aHIF-1A 14q23.2
HIF1A-AS2 HIF1A antisense RNA 2 3'aHIF-1A, aHIF 14q23.2
HMMR-AS1 HMMR antisense RNA 1 5q34
HNF1A-AS1 HNF1A antisense RNA 1 C12orf27, NCRNA00262 FLJ38690, HAS1 12q24.31
HOTAIR HOX transcript antisense RNA HOXC-AS4, HOXC11-AS1, NCRNA00072 12q13.13
HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 HOXA-AS1, NCRNA00179, HOXA1-AS1 7p15.2
HOTTIP HOXA distal transcript antisense RNA NCRNA00213 HOXA-AS6, RP1-170O19.3, HOXA13-AS1 7p15.2
HOXA-AS2 HOXA cluster antisense RNA 2 HOXA3as 7p15.2
HOXA-AS3 HOXA cluster antisense RNA 3 HOXA6as 7p15.2
HOXA11-AS HOXA11 antisense RNA HOXA11AS HOXA11-AS1, HOXA11S, HOXA-AS5, NCRNA00076 7p15.2
HOXC-AS1 HOXC cluster antisense RNA 1 12q13.13
HULC hepatocellular carcinoma up-regulated long non-coding RNA NCRNA00078, LINC00078, HCCAT1 6p24.3
HYMAI hydatidiform mole associated and imprinted NCRNA00020 6q24.2
H19 H19, imprinted maternally expressed transcript D11S813E, ASM, ASM1, NCRNA00008, LINC00008 11p15.5
IFNG-AS1 IFNG antisense RNA 1 Tmevpg1, LincR-Ifng-3'AS, NEST 12q15
IGF2-AS IGF2 antisense RNA IGF2AS PEG8, IGF2-AS1 11p15.5
ILF3-DT ILF3 divergent tranacript ILF3-AS1 19p13.2
IPW imprinted in Prader-Willi syndrome NCRNA00002 15q11.2
IRAIN IGF1R antisense imprinted non-protein coding RNA IGF1R-AS 15q26.3
ITFG2-AS1 ITFG2 antisense RNA 1 12p13.33
JADRR JADE1 adjacent regulatory RNA LINC00915 lncRNA-JADE 4q28.2
JPX JPX transcript, XIST activator NCRNA00183 ENOX, LINC00183, DCBALD06 Xq13.2
KANTR KDM5C adjacent transcript LINC01155 Spasm Xp11.22
KCNIP4-IT1 KCNIP4 intronic transcript 1 NCRNA00099 UM9-5 4p15.2
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 KvDMR1, KCNQ1-AS2, KvLQT1-AS, LIT1, NCRNA00012 11p15.5
KRT7-AS KRT7 antisense RNA 1 12q13.13
LAMC1-AS1 LAMC1 antisense RNA 1 lnc-LAMC2-1:1 1q25.3
LCAL1 lung cancer associated lncRNA 1 onco-lncRNA-27 6q14.1
LEF1-AS1 LEF1 antisense RNA 1 4q25
LINCADL lincRNA adipogenesis and lipogenesis associated linc-ADAL 5q23.1
LINCMD1 long intergenic non-protein coding RNA, muscle differentiation 1 MIR133BHG, LINC-MD1 6p12.2
LINC-PINT long intergenic non-protein coding RNA, p53 induced transcript MKLN1-AS1 FLJ43663, PINT, LincRNA-Pint 7q32.3
LINC-ROR long intergenic non-protein coding RNA, regulator of reprogramming lincRNA-RoR, lincRNA-ST8SIA3, ROR 18q21.31
LINC00052 long intergenic non-protein coding RNA 52 TMEM83, NCRNA00052 FLJ31461 15q25.3
LINC00161 long intergenic non-protein coding RNA 161 C21orf100, NCRNA00161 21q21.3
LINC00163 long intergenic non-protein coding RNA 163 C21orf134, NCRNA00163 NLC1-A, NLC1A 21q22.3
LINC00165 long intergenic non-protein coding RNA 165 C21orf135, NCRNA00165 NLC1-B 21q22.3
LINC00173 long intergenic non-protein coding RNA 173 NCRNA00173 FLJ42957 12q24.22
LINC00261 long intergenic non-protein coding RNA 261 C20orf56, NCRNA00261 bA216C10.1, HCCDR1, TCONS_00027846, ALIEN, DEANR1, onco-lncRNA-17 20p11.21
LINC00305 long intergenic non-protein coding RNA 305 C18orf20, NCRNA00305 MGC39571, HsT1235 18q22.1
LINC00312 long intergenic non-protein coding RNA 312 LOH3CR2A, NCRNA00312 NAG7, NAG-7, ERR10, ERR-10, LMCD1DN 3p25.3
LINC00319 long intergenic non-protein coding RNA 319 C21orf125, NCRNA00319 PRED49, FLJ38036 21q22.3
LINC00346 long intergenic non-protein coding RNA 346 C13orf29, NCRNA00346 13q34
LINC00364 long intergenic non-protein coding RNA 364 LncRNA00364 13q21.32
LINC00460 long intergenic non-protein coding RNA 460 13q33.2
LINC00461 long intergenic non-protein coding RNA 461 EyeLinc1, Visc-1a, Visc-1b, Visc-2, LOC645323, ECONEXIN 5q14.3
LINC00467 long intergenic non-protein coding RNA 467 C1orf97 MGC14801 1q32.3
LINC00470 long intergenic non-protein coding RNA 470 C18orf2 18p11.32
LINC00472 long intergenic non-protein coding RNA 472 C6orf155 dJ288M22.3, FLJ13189, P53RRA 6q13
LINC00473 long intergenic non-protein coding RNA 473 C6orf176 bA142J11.1, LNC473 6q27
LINC00511 long intergenic non-protein coding RNA 511 onco-lncRNA-12 17q24.3
LINC00520 long intergenic non-protein coding RNA 520 C14orf34 14q22.3
LINC00538 long intergenic non-protein coding RNA 538 Yiya, PROX1UT 1q32.3
LINC00570 long intergenic non-protein coding RNA 570 ncRNA-a5 2p25.1
LINC00581 long intergenic non-protein coding RNA 581 6p22.3
LINC00589 long intergenic non-protein coding RNA 589 C8orf75 TSLNC8 8p12
LINC00598 long intergenic non-protein coding RNA 598 TTL, lncFOXO1 13q14.11
LINC00599 long intergenic non-protein coding RNA 599 Rncr3 8p23.1
LINC00628 long intergenic non-protein coding RNA 628 1q32.1
LINC00629 long intergenic non-protein coding RNA 629 Xq26.3
LINC00659 long intergenic non-protein coding RNA 659 20q13.33
LINC00668 long intergenic non-protein coding RNA 668 18p11.31
LINC00672 long intergenic non-protein coding RNA 672 17q12
LINC00673 long intergenic non-protein coding RNA 673 HI-LNC75, SLNCR1, ERRLR01 17q24.3
LINC00707 long intergenic non-protein coding RNA 707 10p14
LINC00850 long intergenic non-protein coding RNA 850 KUCG1 Xq28
LINC00853 long intergenic non-protein coding RNA 853 PDZK1IP1-AS1 ncRNA-a4 1p33
LINC00857 long intergenic non-protein coding RNA 857 10q22.3
LINC00858 long intergenic non-protein coding RNA 858 CRCAL-2 10q23.1
LINC00887 long intergenic non-protein coding RNA 887 linc-ATP13A4-8, HEIRCC 3q29
LINC00958 long intergenic non-protein coding RNA 958 11p15.3
LINC00963 long intergenic non-protein coding RNA 963 MetaLnc9 9q34.11
LINC00968 long intergenic non-protein coding RNA 968 8q12.1
LINC00974 long intergenic non-protein coding RNA 974 17q21.2
LINC00982 long intergenic non-protein coding RNA 982 FLJ42875 1p36.32
LINC01080 long intergenic non-protein coding RNA 1080 TCONS_00021856 13q31.1
LINC01089 long intergenic non-protein coding RNA 1089 LIMT, AK096174 12q24.31
LINC01105 long intergenic non-protein coding RNA 1105 FLJ30594, LOC150622 2p25.2
LINC01116 long intergenic non-protein coding RNA 1116 TALNEC2 2q31.1
LINC01133 long intergenic non-protein coding RNA 1133 lncRNA-PAGBC 1q23.2
LINC01138 long intergenic non-protein coding RNA 1138 LINC00875 FLJ39739 1q21.2
LINC01139 long intergenic non-protein coding RNA 1139 LINK-A, TCONS_00000027 1q43
LINC01157 long intergenic non-protein coding RNA 1157 TCONS_00010378, linc-Enc1 5q13.3
LINC01186 long intergenic non-protein coding RNA 1186 ZNF674-1 Xp11.3
LINC01191 long intergenic non-protein coding RNA 1191 VIN, lnc-ACTR3 2q14.1
LINC01234 long intergenic non-protein coding RNA 1234 onco-lncRNA-32 12q24.13
LINC01510 long intergenic non-protein coding RNA 1510 7q31.2
LINC01513 long intergenic non-protein coding RNA 1513 RP11-1C1.7, TCONS_00009352 5p15.2
LINC01561 long intergenic non-protein coding RNA 1561 C10orf85 FLJ37402, Em:AC023282.2 10q26.12
LINC01567 long intergenic non-protein coding RNA 1567 LOCCS 16p12.1
LINC01844 long intergenic non-protein coding RNA 1844 LOC101926975 5q31.3
LINP1 lncRNA in non-homologous end joining pathway 1 10p14
LNCAROD lncRNA activating regulator of DKK1 LINC01468 lnc-MBL2-4, A-ROD 10q21.1
LNCARSR lncRNA regulator of Akt signaling associated with HCC and RCC lncARSR 9q21.31
LNCNEF lncRNA neighboring enhancer of FOXA2 LINC01384 lncRNA-NEF 20p11.21
LNCOC1 lncRNA associated with ovarian cancer 1 Lnc-OC1 8q24.3
LNCPRESS1 lncRNA p53 regulated and ESC associated 1 lncPRESS1 7q22.1
LNCPRESS2 lncRNA p53 regulated and ESC associated 2 lncPRESS2 4q22.1
LNCSRLR lncRNA sorafenib resistance in renal cell carcinoma associated lncRNA-SRLR 3q24
LRP1-AS LRP1 antisense RNA 12q13.3
LSINCT5 long stress-induced non-coding transcript 5 5p15.33
LUADT1 lung adenocarcinoma associated transcript 1 6q24.3
LUCAT1 lung cancer associated transcript 1 SCAL1, SCAT5 5q14.3
LUNAR1 leukemia-associated non-coding IGF1R activator RNA 1 15q26.3
MACORIS macrophage enriched lincRNA repressor of IFN-gamma signaling MacORIS 10p11.22
MAFTRR MAF transcriptional regulator RNA linc-MAF-4 16q23.2
MALAT1 metastasis associated lung adenocarcinoma transcript 1 PRO1073, MALAT-1, NCRNA00047, HCN, NEAT2, LINC00047, mascRNA 11q13.1
MALINC1 mitosis associated long intergenic non-coding RNA 1 LINC01024 MA-linc1 5q31.2
MAP3K20-AS1 MAP3K20 antisense RNA 1 MLK7-AS1 2q31.1
MDC1-AS1 MDC1 antisense RNA 1 MDC1-AS 6p21.33
MEG3 maternally expressed 3 GTL2, NCRNA00023, LINC00023, onco-lncRNA-83 14q32.2
MEG8 maternally expressed 8, small nucleolar RNA host gene SNHG23, SNHG24 NCRNA00024, Irm, Rian, Bsr, LINC00024, AL132709.8, lnc-MGC 14q32.31
MEG9 maternally expressed 9 LINC00584 14q32.31
MHRT myosin heavy chain associated RNA transcript Myheart 14q11.2
MIAT myocardial infarction associated transcript C22orf35 FLJ25967, Rncr2, gomafu, NCRNA00066, LINC00066, lncRNA-MIAT 22q12.1
MIF-AS1 MIF antisense RNA 1 LOC284889, MIF-AS 22q11.23
MINCR MYC-induced long non-coding RNA LINC01604 TCONS_00015189 8q24.3
MIR17HG miR-17-92a-1 cluster host gene C13orf25, MIRHG1 FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048 13q31.3
MIR22HG MIR22 host gene C17orf91 MGC14376, DKFZp686O06159 17p13.3
MIR31HG MIR31 host gene LOC554202, hsa-lnc-31, LncHIFCAR 9p21.3
MIR99AHG mir-99a-let-7c cluster host gene C21orf35, FLJ38295, C21orf34, LINC00478 MONC 21q21.1
MIR100HG mir-100-let-7a-2-mir-125b-1 cluster host gene AGD1, lncRNA-N2, linc-NeD125 11q24.1
MIR155HG MIR155 host gene MIRHG2 BIC, NCRNA00172 21q21.3
MIR205HG MIR205 host gene LINC00510 1q32.2
MIR222HG miR222/221 cluster host gene Lnc-Ang362 Xp11.3
MIR503HG MIR503 host gene MGC16121, H19X Xq26.3
MIR600HG MIR600 host gene C9orf45, NCRNA00287 GL012, FLJ22161 9q33.3
MIR2052HG MIR2052 host gene 8q21.11-q21.13
MIR4435-2HG MIR4435-2 host gene MIR4435-1HG LINC00978, AGD2, AK001796, lncRNA-AWPPH, MORRBID 2q13
MNX1-AS1 MNX1 antisense RNA 1 (head to head) CCAT5, LOC645249 7q36.3
MT-LIPCAR mitochondrially encoded long non-coding cardiac associated RNA uc022bqs.1, LIPCAR mitochondria
MUC5B-AS1 MUC5B antisense RNA 1 11p15.5
MYCNUT MYCN upstream transcript MYCNUN lncUSMycN 2p24.3
MYOSLID myocardin-induced smooth muscle lncRNA, inducer of differentiation 2q33.3
NALT1 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 MIR4674HG, LINC01573 TCONS_l2_00029132 9q34.3
NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest 9q22.33
NBAT1 neuroblastoma associated transcript 1 CASC14 NBAT-1 6p22.3
NBR2 neighbor of BRCA1 lncRNA 2 NCRNA00192 17q21.31
NCK1-DT NCK1 divergent transcript NCK1-AS1 SLC35G2-AS1 3q22.3
NCRUPAR non-protein coding RNA, upstream of F2R/PAR1 ncR-uPAR, ncRuPAR, NCRNA00193 5q13.3
NEAT1 nuclear paraspeckle assembly transcript 1 NCRNA00084 TncRNA, MENepsilon/beta, LINC00084, VINC 11q13.1
NFIA-AS1 NFIA antisense RNA 1 RP5-833A20.1 1p31.3
NKILA NF-kappaB interacting lncRNA 20q13.31
NNT-AS1 NNT antisense RNA 1 5p12
NORAD non-coding RNA activated by DNA damage LINC00657 20q11.23
NPTN-IT1 NPTN intronic transcript 1 lncRNA-LET 15q24.1
NRAV negative regulator of antiviral response DYNLL1-AS1 12q24.31
NRIR negative regulator of interferon response lncRNA-CMPK2 2p25.2
NRON non-coding repressor of NFAT NCRNA00194 9q33.3
OIP5-AS1 OIP5 antisense RNA 1 cyrano, linc-OIP5 15q15.1
OLMALINC oligodendrocyte maturation-associated long intergenic non-coding RNA C10orf75, NCRNA00263, LINC00263 bA34D15.5, FLJ12974, HI-LNC80 10q24.31
OTX2-AS1 OTX2 antisense RNA 1 (head to head) OTX2OS1 14q22.3
OVAAL ovarian adenocarcinoma amplified long non-coding RNA LINC01131, OVAL 1q25.3
PACERR PTGS2 antisense NFKB1 complex-mediated expression regulator RNA PACER, PTGS2-AS1 1q31.1
PANCR PITX2 adjacent non-coding RNA 4q25
PANDAR promoter of CDKN1A antisense DNA damage activated RNA PANDA 6p21.2
PARAL1 PPARG activating RBM14 associated lncRNA 1 20p12.2
PARTICL promoter of MAT2A antisense radiation-induced circulating long non-coding RNA PARTICLE 2p11.2
PART1 prostate androgen-regulated transcript 1 DKFZP586D0823, NCRNA00206 5q12.1
PAUPAR PAX6 upstream antisense RNA 11p13
PCAT1 prostate cancer associated transcript 1 PCAT-1, PCA1 8q24.21
PCAT4 prostate cancer associated transcript 4 GDEP, PCAN1, PCA4 4q21.21
PCAT5 prostate cancer associated transcript 5 LINC01452 TPCAT-10-36067 10p11.21
PCAT6 prostate cancer associated transcript 6 KDM5B-AS1 ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96 1q32.1
PCAT7 prostate cancer associated transcript 7 PCAN-R2 9q22.32
PCAT14 prostate cancer associated transcript 14 22q11.23
PCAT18 prostate cancer associated transcript 18 LINC01092 18q11.2
PCAT29 prostate cancer associated transcript 29 15q23
PCA3 prostate cancer associated 3 DD3, NCRNA00019, PCAT3, PRUNE2-AS1 9q21.2
PCGEM1 PCGEM1, prostate-specific transcript NCRNA00071, LINC00071, PCAT9 2q32.3
PCSK6-AS1 PCSK6 antisense RNA 1 15q26.3
PEG13 paternally expressed 13 8q24.3
PGR-AS1 PGR antisense RNA 1 AT1, AT2, AT3 11q22.1
PICART1 p53 inducible cancer associated RNA transcript 1 17q21.33
PICSAR P38 inhibited cutaneous squamous cell carcinoma associated lincRNA C21orf113, NCRNA00162, LINC00162 PRED74, NLC1-C 21q22.3
PINCR p53-induced noncoding RNA Xp11.3
PINK1-AS PINK1 antisense RNA PINK1-AS1 FLJ00387, PINK1AS, naPINK1 1p36.12
POU6F2-AS2 POU6F2 antisense RNA 2 FLJ12971 7p14.1
PPP1R12A-AS1 PPP1R12A antisense RNA 1 R12A-AS1 12q21.31
PRAL p53 regulation associated lncRNA lncRNA-PRAL 17p13.1
PRINS psoriasis associated non-protein coding RNA induced by stress NCRNA00074 10p12.1
PRNCR1 prostate cancer associated non-coding RNA 1 PCAT8 8q24.21
PRNT prion locus lncRNA, testis expressed M8 20p13
PSMD6-AS1 PSMD6 antisense RNA 1 ENST00000462717, lnc00462717 3p14.1
PTCSC1 papillary thyroid carcinoma susceptibility candidate 1 PTCSC AK023948, NCRNA00197 8q24
PTCSC2 papillary thyroid carcinoma susceptibility candidate 2 9q22.33
PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 14q13.3
PTENP1-AS PTENP1 antisense RNA PTENpg1-asRNA 9p13.3
PURPL p53 upregulated regulator of p53 levels LINC01021 LOC643401, RP11-46C20.1 5p14.1
PVT1 Pvt1 oncogene NCRNA00079, LINC00079, onco-lncRNA-100, MIR1204HG 8q24.21
PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor PAR-SN, PARSN 15q11.2
PWAR1 Prader Willi/Angelman region RNA 1 PAR1, PAR-1 15q11.2
PWAR5 Prader Willi/Angelman region RNA 5 PAR5, PAR-5 15q11.2
PWRN1 Prader-Willi region non-protein coding RNA 1 NCRNA00198 15q11.2
PWRN2 Prader-Willi region non-protein coding RNA 2 NCRNA00199 15q11.2
RAB11B-AS1 RAB11B antisense RNA 1 MIR4999HG 19p13.2
RAMP2-AS1 RAMP2 antisense RNA 1 17q21.2
RASSF1-AS1 RASSF1 antisense RNA 1 ANRASSF1 3p21.3
RB1-DT RB1 divergent transcript LINC00441 ncRNA-RB1 13q14.2
RGMB-AS1 RGMB antisense RNA 1 5q15
RMST rhabdomyosarcoma 2 associated transcript NCRMS, NCRNA00054, LINC00054 12q23.1
ROCR regulator of chondrogenesis RNA LINC02095 17q24.3
RPS6KA2-AS1 RPS6KA2 antisense RNA 1 6q27
SALRNA1 senescence associated long non-coding RNA 1 SAL-RNA1, XLOC_023166 14q23.1
SAMMSON survival associated mitochondrial melanoma specific oncogenic non-coding RNA LINC01212 3p13
SATB2-AS1 SATB2 antisense RNA 1 2q33.1
SBF2-AS1 SBF2 antisense RNA 1 11p15.4
SCAANT1 SCA7/ATXN7 antisense RNA 1 ATXN7-AS1 3p14.1
SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 LINC00913 SChLAP1, PCAT11 2q31.3
SENCR smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA FLI1-AS1 11q24.3
SLC7A11-AS1 SLC7A11 antisense RNA 1 ENST00000512786 4q28.3
SMILR smooth muscle induced lncRNA, enhancer of proliferation 8q24.13
SNHG1 small nucleolar RNA host gene 1 UHG, NCRNA00057, LINC00057, lncRNA16 11q12.3
SNHG3 small nucleolar RNA host gene 3 RNU17D, RNU17C U17HG, U17HG-A, NCRNA00014 1p35.3
SNHG4 small nucleolar RNA host gene 4 U19H, NCRNA00059 5q31.2
SNHG5 small nucleolar RNA host gene 5 C6orf160 MGC16362, bA33E24.2, U50HG, NCRNA00044, LINC00044 6q14.3
SNHG6 small nucleolar RNA host gene 6 U87HG, HBII-276HG, NCRNA00058 8q13.1
SNHG7 small nucleolar RNA host gene 7 MGC16037, NCRNA00061 9q34.3
SNHG8 small nucleolar RNA host gene 8 NCRNA00060, LINC00060 4q26
SNHG12 small nucleolar RNA host gene 12 C1orf79 PNAS-123, LINC00100, ASLNC04080 1p35.3
SNHG14 small nucleolar RNA host gene 14 UBE3A-AS1 NCRNA00214, UBE3A-AS, UBE3A-ATS 15q11.2
SNHG15 small nucleolar RNA host gene 15 C7orf40 FLJ38860, MYO1GUT, Linc-Myo1g 7p13
SNHG16 small nucleolar RNA host gene 16 ncRAN, Nbla12061, Nbla10727 17q25.1
SNHG18 small nucleolar RNA host gene 18 5p15.31
SOX1-OT SOX1 overlapping transcript LINC00403 13q34
SOX2-OT SOX2 overlapping transcript SOX2OT DKFZp761J1324, NCRNA00043 3q26.33
SOX21-AS1 SOX21 antisense divergent transcript 1 13q32.1
SPRY4-IT1 SPRY4 intronic transcript 1 SPRIGHTLY 5q31.3
TARID TCF21 antisense RNA inducing promoter demethylation EYA4-AS1 6q23.2
TBILA TGF-beta induced lncRNA 3q13.2
TDRG1 testis development related 1 LINC00532, lincRNA-NR_024015 6p21.2
THORLNC testis associated oncogenic lncRNA THOR 2q14.2
THRIL TNF and HNRNPL related immunoregulatory long non-coding RNA Linc1992, TCONS_00020260, BRI3BP-AS1 12q24.31
TH2LCRR T helper type 2 locus control region associated RNA TH2-LCR 5q31.1
TMEM161B-AS1 TMEM161B antisense RNA 1 linc-POLR3G-8 5q14.3
TNRC6C-AS1 TNRC6C antisense RNA 1 17q25.3
TPM1-AS TPM1 antisense RNA TPM1-AS1 15q22.2
TP53COR1 tumor protein p53 pathway corepressor 1 linc-p21, lincRNA-p21, Trp53cor1 6p21.2
TP53TG1 TP53 target 1 TP53AP1 H_RG012D21.9, LINC00096 7q21.12
TP73-AS1 TP73 antisense RNA 1 KIAA0495 PDAM 1p36.32
TRERNA1 translation regulatory long non-coding RNA 1 LINC00651 ncRNA-a7, treRNA 20q13.13
TRPM2-AS TRPM2 antisense RNA TRPM2-AS1 21q22.3
TSIX TSIX transcript, XIST antisense RNA NCRNA00013, XIST-AS1, LINC00013 Xq13.2
TUG1 taurine up-regulated 1 FLJ20618, NCRNA00080, LINC00080 22q12.2
TUNAR TCL1 upstream neural differentiation-associated RNA LINC00617 TUNA, HI-LNC78 14q32.2
TUSC7 tumor suppressor candidate 7 NCRNA00295, LSAMP-AS3 LINC00902, LOC285194 3q13.31
TUSC8 tumor suppressor candidate 8 LINC01071 XLOC_010588 13q14.11
UCA1 urothelial cancer associated 1 LINC00178, CUDR, UCAT1, onco-lncRNA-36 19p13.12
VLDLR-AS1 VLDLR antisense RNA 1 lincRNA-VLDLR 9p24.2
VPS9D1-AS1 VPS9D1 antisense RNA 1 MYU 16q24.3
WSPAR WNT signaling pathway activating non-coding RNA TCONS_00009511-XLOC_004555, lncTCF7 5q31.1
WT1-AS WT1 antisense RNA WIT1 WIT-1, WT1AS, WT1-AS1 11p13
WWOX-AS1 WWOX antisense RNA 1 RP11-190D6.2 16q23.1
XACT X active specific transcript Xq23
XIST X inactive specific transcript DXS399E NCRNA00001, DXS1089, swd66, LINC00001 Xq13.2
YAM1 YY1-associated myogenesis RNA 1 Yam-1 16p11.2
ZEB1-AS1 ZEB1 antisense RNA 1 10p11.22
ZEB2-AS1 ZEB2 antisense RNA 1 ZEB2AS, ZEB2-AS ZEB2NAT 2q22.3
ZFAS1 ZNFX1 antisense RNA 1 C20orf199, NCRNA00275, ZNFX1-AS1 HSUP1, HSUP2 20q13.13
ZFPM2-AS1 ZFPM2 antisense RNA 1 SCAT3 8q23.1
ZNF503-AS1 ZNF503 antisense RNA 1 10q22.2

External resources