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Gene Family: Long non-coding RNAs

Also known as : "lncRNAs", "long ncRNAs", "Long non coding RNAs"
A subset of : Non-coding RNAs

Long non-coding RNA: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides (Perkel 2013). [Source: Wikipedia]

Genes contained within the family: 318

Approved Symbol Approved Name Previous Symbols Synonyms Chromosome
AATBC apoptosis associated transcript in bladder cancer 21q22.3
ABALON apoptotic BCL2L1-antisense long non-coding RNA INXS 20q11.21
ABHD11-AS1 ABHD11 antisense RNA 1 (tail to tail) WBSCR26, LINC00035 NCRNA00035 7q11.23
AFAP1-AS1 AFAP1 antisense RNA 1 AFAP1AS, AFAP1-AS MGC10981 4p16.1
AIRN antisense of IGF2R non-protein coding RNA AIR, NCRNA00088, IGF2RAS, IGF2R-AS1 6q25.3
APOA1-AS APOA1 antisense RNA 11q23.3
APTR Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) RSBN1L-AS1 7q11.23
ATXN8OS ATXN8 opposite strand (non-protein coding) SCA8, KLHL1AS NCRNA00003 13q21.33
BACE1-AS BACE1 antisense RNA BACE1AS FJ573250, NCRNA00177, BACE1-AS1 11q23.3
BANCR BRAF-activated non-protein coding RNA LINC00586 9q21.11-q21.12
BCYRN1 brain cytoplasmic RNA 1 BC200, BC200a, NCRNA00004, LINC00004 2p21
BDNF-AS BDNF antisense RNA BDNFOS BT2A, BT2B, BT2C, BT2D, NCRNA00049, BDNF-AS1, BDNFAS 11p14.1
BGLT3 beta globin locus transcript 3 (non-protein coding) LINC01083, BGL3, lncRNA-BGL3 11p15.4
BIRC6-AS2 BIRC6 antisense RNA 2 megamind 2p22.3
BISPR BST2 interferon stimulated positive regulator (non-protein coding) 19p13.11
BLACAT1 bladder cancer associated transcript 1 (non-protein coding) linc-UBC1, LINC00912, onco-lncRNA-30 1q32.1
BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) NCRNA00187 3q23
BRE-AS1 BRE antisense RNA 1 2p23.2
B4GALT1-AS1 B4GALT1 antisense RNA 1 9p21.1
CAHM colon adenocarcinoma hypermethylated (non-protein coding) LINC00468 6q26
CARMN cardiac mesoderm enhancer-associated non-coding RNA MIR143HG CARMEN 5q32
CASC8 cancer susceptibility 8 (non-protein coding) LINC00860, CARLo-1 8q24.21
CASC11 cancer susceptibility 11 (non-protein coding) TCONS_00014535, LINC00990, CARLo-7, ENST00000518376 8q24.21
CASC15 cancer susceptibility 15 (non-protein coding) LINC00340 lnc-SOX4-1 6p22.3
CASC19 cancer susceptibility 19 (non-protein coding) LINC01245 CARLo-6 8q24.21
CASC21 cancer susceptibility 21 (non-protein coding) LINC01244 CARLo-2 8q24.21
CASC22 cancer susceptibility 22 (non-protein coding) LINC01373 TCONS_00024290, LincRNA-ENST00000515084 16q12.1
CBR3-AS1 CBR3 antisense RNA 1 PlncRNA-1 21q22.12
CCAT1 colon cancer associated transcript 1 (non-protein coding) CARLo-5, onco-lncRNA-40 8q24.21
CCAT2 colon cancer associated transcript 2 (non-protein coding) NCCP1, LINC00873 8q24.21
CCND2-AS1 CCND2 antisense RNA 1 CCND2-AS2 12p13.32
CDKN2B-AS1 CDKN2B antisense RNA 1 CDKN2BAS ANRIL, RP11-145E5.4, NCRNA00089, p15AS, CDKN2B-AS, PCAT12 9p21.3
CDR1-AS CDR1 antisense RNA CDR1NAT, ciRS-7, CDR1as Xq27.1
CERNA1 competing endogenous lncRNA 1 for miR-4707-5p and miR-4767 LOC100129973 15q21.2
CERNA2 competing endogenous lncRNA 2 for microRNA let-7b HOST2 10q23.1
CERNA3 competing endogenous lncRNA 3 for miR-645 CTA 8q12.1
CFTR-AS1 CFTR antisense RNA 1 BGas 7q31.2
CISTR chondrogenesis-associated transcript CISTR-ACT, CISTRACT, re52431 12q13.13
CLMAT3 colorectal liver metastasis associated transcript 3 SPARC-AS1 5q33.1
CRNDE colorectal neoplasia differentially expressed LOC643911, LINC00180, CRNDEP 16q12.2
CTBP1-AS CTBP1 antisense RNA PCAT10 4p16.3
CYP4A22-AS1 CYP4A22 antisense RNA 1 ncRNA-a3 1p33
CYTOR cytoskeleton regulator RNA C2orf59, NCRNA00152, LINC00152 MGC4677 2p11.2
CYYR1-AS1 cysteine and tyrosine rich 1 antisense RNA 1 21q21.3
DACOR1 DNMT1-associated colon cancer repressed lncRNA 1 TCONS_00023265 15q22.33
DALIR DNMT1-associated long intergenic non-coding RNA DALI 2q12
DANCR differentiation antagonizing non-protein coding RNA KIAA0114, SNHG13 ANCR, AGU2, lncRNA-ANCR 4q12
DANT1 DXZ4 associated non-coding transcript 1, proximal Xq23
DANT2 DXZ4 associated non-coding transcript 2, distal Xq23
DARS-AS1 DARS antisense RNA 1 2q21.3
DBET D4Z4 binding element transcript (non-protein coding) DBE-T, DUX4L30 4q35.2
DBH-AS1 DBH antisense RNA 1 NCRNA00118 BPR 9q34.2
DDIT4-AS1 DDIT4 antisense RNA 1 RP11-442H21.2 10q22.1
DDX11-AS1 DDX11 antisense RNA 1 CONCR 12p11.21
DGCR5 DiGeorge syndrome critical region gene 5 (non-protein coding) NCRNA00037, LINC00037 22q11.21
DHRS4-AS1 DHRS4 antisense RNA 1 C14orf167 PRO1488, AS1DHRS4 14q11.2
DINOL damage induced long noncoding RNA DINO 6p21.2
DIO3OS DIO3 opposite strand/antisense RNA (head to head) C14orf134 NCRNA00041, DIO3-AS1 14q32.31
DISC2 disrupted in schizophrenia 2 (non-protein coding) DISC1-AS1, DISC1OS, NCRNA00015 1q42.1
DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) DLB1, BCMS LEU1, XTP6, NCRNA00021, LINC00021, BCMS1 13q14.2-q14.3
DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) DLB2, BCMSUN, RFP2OS LEU2, TRIM13OS, NCRNA00022, LINC00022, MIR15AHG 13q14.2
DLG2-AS1 DLG2 antisense RNA 1 DLG2AS, DLG2-AS PSZA11q14, SZ-1 11q14.1
DLX6-AS1 DLX6 antisense RNA 1 NCRNA00212 FLJ34048, Evf-2 7q21.3
DRAIC downregulated RNA in cancer, inhibitor of cell invasion and migration 15q23
DSCAM-AS1 DSCAM antisense RNA 1 M41 21q22.2
EGFR-AS1 EGFR antisense RNA 1 7p11.2
EGOT eosinophil granule ontogeny transcript (non-protein coding) EGO, NCRNA00190 3p26.1
EMX2OS EMX2 opposite strand/antisense RNA NCRNA00045, EMX2-AS1 10q26.11
ERICD E2F1-regulated inhibitor of cell death (non-protein coding) LINC01130 TCONS_00014875, ERIC 8q24.3
ERLNC1 estrogen receptor responsive lncRNA 1 TC0101441, ElncRNA1 1q32.1
ESRG embryonic stem cell related (non-protein coding) HESRG 3p14.3
EWSAT1 Ewing sarcoma associated transcript 1 TMEM84, NCRNA00277, LINC00277 FLJ33768 15q23
FALEC focally amplified long non-coding RNA in epithelial cancer LINC00568 ncRNA-a1, FAL1 1q21.2
FAM83H-AS1 FAM83H antisense RNA 1 (head to head) onco-lncRNA-3 8q24.3
FAS-AS1 FAS antisense RNA 1 FASAS, FAS-AS SAF 10q23.31
FBXL19-AS1 FBXL19 antisense RNA 1 (head to head) NCRNA00095 MGC125469, MGC125470, MGC125472 16p11.2
FENDRR FOXF1 adjacent non-coding developmental regulatory RNA FOXF1-AS1 lincFOXF1, onco-lncRNA-21 16q24.1
FEZF1-AS1 FEZF1 antisense RNA 1 7q31.32
FGF14-AS2 FGF14 antisense RNA 2 13q33.1
FILNC1 FOXO induced long non-coding RNA 1 6q24.1
FIRRE firre intergenic repeating RNA element LINC01200 Xq26.2
FLICR FOXP3 regulating long intergenic non-coding RNA Xp11.23
FMR1-AS1 FMR1 antisense RNA 1 (head to head) FMR1AS, FMR1-AS ASFMR1, FMR4 Xq27.3
FOXCUT FOXC1 upstream transcript (non-protein coding) LINC01379 TCONS_00011636 6p25.3
FOXD2-AS1 FOXD2 adjacent opposite strand RNA 1 MGC12982 1p33
FOXD3-AS1 FOXD3 antisense RNA 1 (head to head) pasFOXD3 1p31.3
FOXP4-AS1 FOXP4 antisense RNA 1 6p21.1
FTX FTX transcript, XIST regulator (non-protein coding) NCRNA00182, MIR374AHG LINC00182, FLJ33139 Xq13.2
GACAT1 gastric cancer associated transcript 1 (non-protein coding) LINC00876, AC096655.1-002 2q12.3
GACAT2 gastric cancer associated transcript 2 (non-protein coding) MTCL1-AS1 HMlincRNA717 18p11.22
GACAT3 gastric cancer associated transcript 3 (non-protein coding) LINC01458 lncRNA-AC130710 2p24.3
GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA LINC01540 TCONS_00026238, lncRNA-uc002kmd.1 18p11.31
GASAL1 growth arrest associated lncRNA 1 GASL1 8q22.3
GAS1RR GAS1 adjacent regulatory RNA LncRNA-Hh 9q21.33
GAS5 growth arrest specific 5 (non-protein coding) SNHG2, NCRNA00030 1q25.1
GAS8-AS1 GAS8 antisense RNA 1 C16orf3 16q24.3
GCASPC gall bladder cancer associated suppressor of pyruvate carboxylase lncRNA TCONS_00011605, RP1-56L9.7-001, lnc-SOD2-1 6q25.3
GHET1 gastric carcinoma proliferation enhancing transcript 1 lncRNA-GHET1 7q36.1
GHRLOS ghrelin opposite strand/antisense RNA NCRNA00068, GHRL-AS1 3p25.3
GNAS-AS1 GNAS antisense RNA 1 GNASAS, GNAS-AS SANG, NESP-AS, NESPAS, GNAS1AS, NCRNA00075 20q13.32
GNG12-AS1 GNG12 antisense RNA 1 1p31.3
GPC3-AS1 GPC3 antisense RNA 1 Xq26.2
GPR1-AS GPR1 antisense RNA GPR1-AS1 GPR1AS 2q33.3
GSEC G-quadruplex forming sequence containing lncRNA ST3GAL4-AS1 DCPS-AS1, FLJ39051 11q24.2
HAGLR HOXD antisense growth-associated long non-coding RNA HOXD-AS1 Mdgt 2q31.1
HAR1A highly accelerated region 1A (non-protein coding) HAR1F, NCRNA00064, LINC00064 20q13.33
HAR1B highly accelerated region 1B (non-protein coding) HAR1R, NCRNA00065, LINC00065 20q13.33
HAS2-AS1 HAS2 antisense RNA 1 HAS2AS, HAS2-AS HASNT, NCRNA00077 8q24.13
HCG11 HLA complex group 11 (non-protein coding) bK14H9.3, FLJ14049, FLJ30357 6p22.2
HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA LINC-HEIH, lncRNA-HEIH, LINC00848, HCCAT2 5q35.3
HIF1A-AS1 HIF1A antisense RNA 1 5'aHIF-1A 14q23.2
HIF1A-AS2 HIF1A antisense RNA 2 3'aHIF-1A, aHIF 14q23.2
HMMR-AS1 HMMR antisense RNA 1 5q34
HNF1A-AS1 HNF1A antisense RNA 1 C12orf27, NCRNA00262 FLJ38690, HAS1 12q24.31
HOTAIR HOX transcript antisense RNA HOXC-AS4, HOXC11-AS1, NCRNA00072 12q13.13
HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 HOXA-AS1, NCRNA00179, HOXA1-AS1 7p15.2
HOTTIP HOXA distal transcript antisense RNA NCRNA00213 HOXA-AS6, RP1-170O19.3, HOXA13-AS1 7p15.2
HOXA-AS2 HOXA cluster antisense RNA 2 HOXA3as 7p15.2
HOXA-AS3 HOXA cluster antisense RNA 3 HOXA6as 7p15.2
HOXA11-AS HOXA11 antisense RNA HOXA11AS HOXA11-AS1, HOXA11S, HOXA-AS5, NCRNA00076 7p15.2
HOXC-AS1 HOXC cluster antisense RNA 1 12q13.13
HULC hepatocellular carcinoma up-regulated long non-coding RNA NCRNA00078, LINC00078, HCCAT1 6p24.3
HYMAI hydatidiform mole associated and imprinted (non-protein coding) NCRNA00020 6q24.2
H19 H19, imprinted maternally expressed transcript (non-protein coding) D11S813E, ASM, ASM1, NCRNA00008, LINC00008 11p15.5
IFNG-AS1 IFNG antisense RNA 1 Tmevpg1, LincR-Ifng-3'AS, NEST 12q15
IGF2-AS IGF2 antisense RNA IGF2AS PEG8, IGF2-AS1 11p15.5
IPW imprinted in Prader-Willi syndrome (non-protein coding) NCRNA00002 15q11.2
IRAIN IGF1R antisense imprinted non-protein coding RNA IGF1R-AS 15q26.3
ITFG2-AS1 ITFG2 antisense RNA 1 12p13.33
JADRR JADE1 adjacent regulatory RNA LINC00915 lncRNA-JADE 4q28.2
JPX JPX transcript, XIST activator (non-protein coding) NCRNA00183 ENOX, LINC00183, DCBALD06 Xq13.2
KANTR KDM5C adjacent transcript LINC01155 Spasm Xp11.22
KCNIP4-IT1 KCNIP4 intronic transcript 1 NCRNA00099 UM9-5 4p15.2
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) KvDMR1, KCNQ1-AS2, KvLQT1-AS, LIT1, NCRNA00012 11p15.5
KRT7-AS KRT7 antisense RNA 1 12q13.13
LCAL1 lung cancer associated lncRNA 1 onco-lncRNA-27 6q14.1
LINCMD1 long intergenic non-protein coding RNA, muscle differentiation 1 MIR133BHG, LINC-MD1 6p12.2
LINC-PINT long intergenic non-protein coding RNA, p53 induced transcript MKLN1-AS1 FLJ43663, PINT, LincRNA-Pint 7q32.3
LINC-ROR long intergenic non-protein coding RNA, regulator of reprogramming lincRNA-RoR, lincRNA-ST8SIA3, ROR 18q21.31
LINC00052 long intergenic non-protein coding RNA 52 TMEM83, NCRNA00052 FLJ31461 15q25.3
LINC00161 long intergenic non-protein coding RNA 161 C21orf100, NCRNA00161 21q21.3
LINC00163 long intergenic non-protein coding RNA 163 C21orf134, NCRNA00163 NLC1-A, NLC1A 21q22.3
LINC00165 long intergenic non-protein coding RNA 165 C21orf135, NCRNA00165 NLC1-B 21q22.3
LINC00173 long intergenic non-protein coding RNA 173 NCRNA00173 FLJ42957 12q24.22
LINC00261 long intergenic non-protein coding RNA 261 C20orf56, NCRNA00261 bA216C10.1, HCCDR1, TCONS_00027846, ALIEN, DEANR1, onco-lncRNA-17 20p11.21
LINC00305 long intergenic non-protein coding RNA 305 C18orf20, NCRNA00305 MGC39571, HsT1235 18q22.1
LINC00312 long intergenic non-protein coding RNA 312 LOH3CR2A, NCRNA00312 NAG7, NAG-7, ERR10, ERR-10, LMCD1DN 3p25.3
LINC00472 long intergenic non-protein coding RNA 472 C6orf155 dJ288M22.3, FLJ13189 6q13
LINC00473 long intergenic non-protein coding RNA 473 C6orf176 bA142J11.1 6q27
LINC00511 long intergenic non-protein coding RNA 511 onco-lncRNA-12 17q24.3
LINC00570 long intergenic non-protein coding RNA 570 ncRNA-a5 2p25.1
LINC00581 long intergenic non-protein coding RNA 581 6p22.3
LINC00598 long intergenic non-protein coding RNA 598 TTL 13q14.11
LINC00599 long intergenic non-protein coding RNA 599 Rncr3 8p23.1
LINC00629 long intergenic non-protein coding RNA 629 Xq26.3
LINC00672 long intergenic non-protein coding RNA 672 17q12
LINC00673 long intergenic non-protein coding RNA 673 HI-LNC75, SLNCR1 17q24.3
LINC00850 long intergenic non-protein coding RNA 850 KUCG1 Xq28
LINC00853 long intergenic non-protein coding RNA 853 PDZK1IP1-AS1 ncRNA-a4 1p33
LINC00968 long intergenic non-protein coding RNA 968 8q12.1
LINC01080 long intergenic non-protein coding RNA 1080 TCONS_00021856 13q31.1
LINC01105 long intergenic non-protein coding RNA 1105 FLJ30594, LOC150622 2p25.2
LINC01116 long intergenic non-protein coding RNA 1116 TALNEC2 2q31.1
LINC01133 long intergenic non-protein coding RNA 1133 lncRNA-PAGBC 1q23.2
LINC01139 long intergenic non-protein coding RNA 1139 LINK-A, TCONS_00000027 1q43
LINC01157 long intergenic non-protein coding RNA 1157 TCONS_00010378, linc-Enc1 5q13.3
LINC01186 long intergenic non-protein coding RNA 1186 Xp11.3
LINC01191 long intergenic non-protein coding RNA 1191 VIN, lnc-ACTR3 2q14.1
LINC01234 long intergenic non-protein coding RNA 1234 onco-lncRNA-32 12q24.13
LINC01513 long intergenic non-protein coding RNA 1513 RP11-1C1.7, TCONS_00009352 5p15.2
LINC01844 long intergenic non-protein coding RNA 1844 LOC101926975 5q31.3
LINP1 lncRNA in non-homologous end joining pathway 1 10p14
LNCPRESS1 lncRNA p53 regulated and ESC associated 1 lncPRESS1 7q22.1
LNCPRESS2 lncRNA p53 regulated and ESC associated 2 lncPRESS2 4q22.1
LNCSRLR lncRNA sorafenib resistance in renal cell carcinoma associated lncRNA-SRLR 3q24
LRP1-AS LRP1 antisense RNA 12q13.3
LSINCT5 long stress-induced non-coding transcript 5 5p15.33
LUADT1 lung adenocarcinoma associated transcript 1 6q24.3
LUCAT1 lung cancer associated transcript 1 (non-protein coding) SCAL1 5q14.3
LUNAR1 leukemia-associated non-coding IGF1R activator RNA 1 15q26.3
MAFTRR MAF transcriptional regulator RNA linc-MAF-4 16q23.2
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) PRO1073, MALAT-1, NCRNA00047, HCN, NEAT2, LINC00047, mascRNA 11q13.1
MALINC1 mitosis associated long intergenic non-coding RNA 1 LINC01024 MA-linc1 5q31.2
MDC1-AS1 MDC1 antisense RNA 1 MDC1-AS 6p21.33
MEG3 maternally expressed 3 (non-protein coding) GTL2, NCRNA00023, LINC00023, onco-lncRNA-83 14q32.2
MEG8 maternally expressed 8, small nucleolar RNA host gene SNHG23, SNHG24 NCRNA00024, Irm, Rian, Bsr, LINC00024, AL132709.8, lnc-MGC 14q32.31
MEG9 maternally expressed 9 (non-protein coding) LINC00584 14q32.31
MHRT myosin heavy chain associated RNA transcript Myheart 14q11.2
MIAT myocardial infarction associated transcript (non-protein coding) C22orf35 FLJ25967, Rncr2, gomafu, NCRNA00066, LINC00066, lncRNA-MIAT 22q12.1
MIF-AS1 MIF antisense RNA 1 LOC284889, MIF-AS 22q11.23
MINCR MYC-induced long non-coding RNA LINC01604 TCONS_00015189 8q24.3
MIR17HG miR-17-92a-1 cluster host gene C13orf25, MIRHG1 FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048 13q31.3
MIR22HG MIR22 host gene C17orf91 MGC14376, DKFZp686O06159 17p13.3
MIR31HG MIR31 host gene LOC554202, hsa-lnc-31, LncHIFCAR 9p21.3
MIR99AHG mir-99a-let-7c cluster host gene C21orf35, FLJ38295, C21orf34, LINC00478 MONC 21q21.1
MIR100HG mir-100-let-7a-2-mir-125b-1 cluster host gene AGD1, lncRNA-N2, linc-NeD125 11q24.1
MIR155HG MIR155 host gene MIRHG2 BIC, NCRNA00172 21q21.3
MIR222HG MIR222 host gene Lnc-Ang362 Xp11.3
MIR503HG MIR503 host gene MGC16121, H19X Xq26.3
MIR600HG MIR600 host gene C9orf45, NCRNA00287 GL012, FLJ22161 9q33.3
MIR2052HG MIR2052 host gene 8q21.11-q21.13
MIR4435-2HG MIR4435-2 host gene MIR4435-1HG LINC00978, AGD2, AK001796, lncRNA-AWPPH, MORRBID 2q13
MT-LIPCAR mitochondrially encoded long non-coding cardiac associated RNA uc022bqs.1, LIPCAR mitochondria
MYCNOS MYCN opposite strand NCYM, N-CYM, MYCN-AS1 2p24.3
MYCNUT MYCN upstream transcript (non-protein coding) MYCNUN lncUSMycN 2p24.3
MYOSLID myocardin-induced smooth muscle lncRNA, inducer of differentiation 2q33.3
NALT1 NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1 MIR4674HG, LINC01573 TCONS_l2_00029132 9q34.3
NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest 9q22.33
NBAT1 neuroblastoma associated transcript 1 CASC14 NBAT-1 6p22.3
NBR2 neighbor of BRCA1 gene 2 (non-protein coding) NCRNA00192 17q21.31
NCRUPAR non-protein coding RNA, upstream of F2R/PAR1 ncR-uPAR, ncRuPAR, NCRNA00193 5q13.3
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) NCRNA00084 TncRNA, MENepsilon/beta, LINC00084, VINC 11q13.1
NFIA-AS1 NFIA antisense RNA 1 RP5-833A20.1 1p31.3
NKILA NF-kappaB interacting lncRNA 20q13.31
NNT-AS1 NNT antisense RNA 1 5p12
NORAD non-coding RNA activated by DNA damage LINC00657 20q11.23
NRAV negative regulator of antiviral response (non-protein coding) DYNLL1-AS1 12q24.31
NRIR negative regulator of interferon response (non-protein coding) lncRNA-CMPK2 2p25.2
NRON non-protein coding RNA, repressor of NFAT NCRNA00194 9q33.3
OIP5-AS1 OIP5 antisense RNA 1 cyrano, linc-OIP5 15q15.1
OLMALINC oligodendrocyte maturation-associated long intergenic non-coding RNA C10orf75, NCRNA00263, LINC00263 bA34D15.5, FLJ12974, HI-LNC80 10q24.31
OTX2-AS1 OTX2 antisense RNA 1 (head to head) OTX2OS1 14q22.3
OVAAL ovarian adenocarcinoma amplified long non-coding RNA LINC01131, OVAL 1q25.3
PACERR PTGS2 antisense NFKB1 complex-mediated expression regulator RNA PACER, PTGS2-AS1 1q31.1
PANCR PITX2 adjacent non-coding RNA 4q25
PANDAR promoter of CDKN1A antisense DNA damage activated RNA PANDA 6p21.2
PARTICL promoter of MAT2A antisense radiation-induced circulating long non-coding RNA PARTICLE 2p11.2
PART1 prostate androgen-regulated transcript 1 (non-protein coding) DKFZP586D0823, NCRNA00206 5q12.1
PAUPAR PAX6 upstream antisense RNA 11p13
PCAT1 prostate cancer associated transcript 1 (non-protein coding) PCAT-1, PCA1 8q24.21
PCAT4 prostate cancer associated transcript 4 (non-protein coding) GDEP, PCAN1, PCA4 4q21.21
PCAT5 prostate cancer associated transcript 5 (non-protein coding) LINC01452 TPCAT-10-36067 10p11.21
PCAT6 prostate cancer associated transcript 6 (non-protein coding) KDM5B-AS1 ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96 1q32.1
PCAT7 prostate cancer associated transcript 7 (non-protein coding) PCAN-R2 9q22.32
PCAT14 prostate cancer associated transcript 14 (non-protein coding) 22q11.23
PCAT18 prostate cancer associated transcript 18 (non-protein coding) LINC01092 18q11.2
PCAT29 prostate cancer associated transcript 29 (non-protein coding) 15q23
PCA3 prostate cancer associated 3 (non-protein coding) DD3, NCRNA00019, PCAT3 9q21.2
PCGEM1 PCGEM1, prostate-specific transcript (non-protein coding) NCRNA00071, LINC00071, PCAT9 2q32.3
PCSK6-AS1 PCSK6 antisense RNA 1 15q26.3
PEG13 paternally expressed 13 8q24.3
PGR-AS1 PGR antisense RNA 1 AT1, AT2, AT3 11q22.1
PICSAR P38 inhibited cutaneous squamous cell carcinoma associated lincRNA C21orf113, NCRNA00162, LINC00162 PRED74, NLC1-C 21q22.3
PINCR p53-induced noncoding RNA Xp11.3
PINK1-AS PINK1 antisense RNA PINK1-AS1 FLJ00387, PINK1AS, naPINK1 1p36.12
POU6F2-AS2 POU6F2 antisense RNA 2 FLJ12971 7p14.1
PPP1R12A-AS1 PPP1R12A antisense RNA 1 R12A-AS1 12q21.31
PRAL p53 regulation associated lncRNA lncRNA-PRAL 17p13.1
PRINS psoriasis associated non-protein coding RNA induced by stress NCRNA00074 10p12.1
PRNCR1 prostate cancer associated non-coding RNA 1 PCAT8 8q24.21
PRNT prion locus lncRNA, testis expressed M8 20p13
PSMD6-AS1 PSMD6 antisense RNA 1 ENST00000462717, lnc00462717 3p14.1
PTCSC1 papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) PTCSC AK023948, NCRNA00197 8q24
PTCSC2 papillary thyroid carcinoma susceptibility candidate 2 (non-protein coding) 9q22.33
PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) 14q13.3
PTENP1-AS PTENP1 antisense RNA PTENpg1-asRNA 9p13.3
PURPL p53 upregulated regulator of p53 levels LINC01021 LOC643401, RP11-46C20.1 5p14.1
PVT1 Pvt1 oncogene (non-protein coding) NCRNA00079, LINC00079, onco-lncRNA-100, MIR1204HG 8q24.21
PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor PAR-SN, PARSN 15q11.2
PWAR1 Prader Willi/Angelman region RNA 1 PAR1, PAR-1 15q11.2
PWAR5 Prader Willi/Angelman region RNA 5 PAR5, PAR-5 15q11.2
PWRN1 Prader-Willi region non-protein coding RNA 1 NCRNA00198 15q11.2
PWRN2 Prader-Willi region non-protein coding RNA 2 NCRNA00199 15q11.2
RAMP2-AS1 RAMP2 antisense RNA 1 17q21.2
RASSF1-AS1 RASSF1 antisense RNA 1 ANRASSF1 3p21.3
RGMB-AS1 RGMB antisense RNA 1 5q15
RMST rhabdomyosarcoma 2 associated transcript (non-protein coding) NCRMS, NCRNA00054, LINC00054 12q23.1
RPS6KA2-AS1 RPS6KA2 antisense RNA 1 6q27
SALRNA1 senescence associated long non-coding RNA 1 SAL-RNA1, XLOC_023166 14q23.1
SAMMSON survival associated mitochondrial melanoma specific oncogenic non-coding RNA LINC01212 3p13
SATB2-AS1 SATB2 antisense RNA 1 2q33.1
SCAANT1 SCA7/ATXN7 antisense RNA 1 ATXN7-AS1 3p14.1
SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) LINC00913 SChLAP1, PCAT11 2q31.3
SENCR smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA FLI1-AS1 11q24.3
SMILR smooth muscle induced lncRNA, enhancer of proliferation 8q24.13
SNHG1 small nucleolar RNA host gene 1 UHG, NCRNA00057, LINC00057, lncRNA16 11q12.3
SNHG3 small nucleolar RNA host gene 3 RNU17D, RNU17C U17HG, U17HG-A, NCRNA00014 1p35.3
SNHG4 small nucleolar RNA host gene 4 U19H, NCRNA00059 5q31.2
SNHG5 small nucleolar RNA host gene 5 C6orf160 MGC16362, bA33E24.2, U50HG, NCRNA00044, LINC00044 6q14.3
SNHG6 small nucleolar RNA host gene 6 U87HG, HBII-276HG, NCRNA00058 8q13.1
SNHG8 small nucleolar RNA host gene 8 NCRNA00060, LINC00060 4q26
SNHG12 small nucleolar RNA host gene 12 C1orf79 PNAS-123, LINC00100, ASLNC04080 1p35.3
SNHG16 small nucleolar RNA host gene 16 ncRAN, Nbla12061, Nbla10727 17q25.1
SNHG18 small nucleolar RNA host gene 18 5p15.31
SOX1-OT SOX1 overlapping transcript LINC00403 13q34
SOX2-OT SOX2 overlapping transcript SOX2OT DKFZp761J1324, NCRNA00043 3q26.33
SOX21-AS1 SOX21 antisense divergent transcript 1 13q32.1
SPRY4-IT1 SPRY4 intronic transcript 1 SPRIGHTLY 5q31.3
TARID TCF21 antisense RNA inducing promoter demethylation EYA4-AS1 6q23.2
TDRG1 testis development related 1 (non-protein coding) LINC00532, lincRNA-NR_024015 6p21.2
THRIL TNF and HNRNPL related immunoregulatory long non-coding RNA Linc1992, TCONS_00020260, BRI3BP-AS1 12q24.31
TH2LCRR T helper type 2 locus control region associated RNA TH2-LCR 5q31.1
TINCR TINCR ubiquitin domain containing PLAC2 FLJ90734, NCRNA00036, LINC00036, onco-lncRNA-16 19p13.3
TMEM161B-AS1 TMEM161B antisense RNA 1 linc-POLR3G-8 5q14.3
TPM1-AS TPM1 antisense RNA TPM1-AS1 15q22.2
TP53COR1 tumor protein p53 pathway corepressor 1 (non-protein coding) linc-p21, lincRNA-p21, Trp53cor1 6p21.2
TP53TG1 TP53 target 1 (non-protein coding) TP53AP1 H_RG012D21.9, LINC00096 7q21.12
TP73-AS1 TP73 antisense RNA 1 KIAA0495 PDAM 1p36.32
TRERNA1 translation regulatory long non-coding RNA 1 LINC00651 ncRNA-a7, treRNA 20q13.13
TRPM2-AS TRPM2 antisense RNA TRPM2-AS1 21q22.3
TSIX TSIX transcript, XIST antisense RNA NCRNA00013, XIST-AS1, LINC00013 Xq13.2
TUG1 taurine up-regulated 1 (non-protein coding) FLJ20618, NCRNA00080, LINC00080 22q12.2
TUNAR TCL1 upstream neural differentiation-associated RNA LINC00617 TUNA, HI-LNC78 14q32.2
TUSC7 tumor suppressor candidate 7 (non-protein coding) NCRNA00295, LSAMP-AS3 LINC00902, LOC285194 3q13.31
TUSC8 tumor suppressor candidate 8 (non-protein coding) LINC01071 XLOC_010588 13q14.11
UCA1 urothelial cancer associated 1 (non-protein coding) LINC00178, CUDR, UCAT1, onco-lncRNA-36 19p13.12
VLDLR-AS1 VLDLR antisense RNA 1 lincRNA-VLDLR 9p24.2
VPS9D1-AS1 VPS9D1 antisense RNA 1 MYU 16q24.3
WSPAR WNT signaling pathway activating non-coding RNA TCONS_00009511-XLOC_004555, lncTCF7 5q31.1
WT1-AS WT1 antisense RNA WIT1 WIT-1, WT1AS, WT1-AS1 11p13
WWOX-AS1 WWOX antisense RNA 1 RP11-190D6.2 16q23.1
XACT X active specific transcript (non-protein coding) Xq23
XIST X inactive specific transcript (non-protein coding) DXS399E NCRNA00001, DXS1089, swd66, LINC00001 Xq13.2
YAM1 YY1-associated myogenesis RNA 1 Yam-1 16p11.2
ZEB1-AS1 ZEB1 antisense RNA 1 10p11.22
ZEB2-AS1 ZEB2 antisense RNA 1 ZEB2AS, ZEB2-AS ZEB2NAT 2q22.3
ZFAS1 ZNFX1 antisense RNA 1 C20orf199, NCRNA00275, ZNFX1-AS1 HSUP1, HSUP2 20q13.13
ZNF503-AS1 ZNF503 antisense RNA 1 10q22.2

Comments

This page lists long non-coding RNA genes that encode a transcript with published evidence. Links to the relevant publications can be accessed from the Symbol Report for each gene. Note that Transcribed pseudogenes with a published function are listed separately. All genes with the locus type "RNA, long non-coding" can be downloaded from our Statistics and Downloads page.

External resources