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Genome Databases and Browsers
Human Genome Databases, Browsers and Variation Resources
Other Vertebrate Genome Databases and Browsers
- AgBase a curated, open-source resource for functional analysis of agricultural plant and animal gene products
- AnolisGenome a community resource site for Anolis genomics and genetic studies
- ARKdb species databases includes: Cat, Chicken, Cow, Deer, Horse, Pig, Salmon, Sheep, Tilapia, Turkey
- BirdBase A Database of Avian Genes and Genomes
- Bovmap mapping the Bovine genome
- Cat Genome Project
- Chicken Genome Resources
- The Dog Genome Project
- Ensembl genome databases for vertebrates and other eukaryotic species
- Entrez Gene searchable database of genes, from RefSeq genomes, defined by sequence and/or located in the NCBI Map Viewer
- Fugu the Fugu genomics project
- Horse Genome Project
- Kangaroo Genome Project
- lizardbase a centralized and consolidated informatics resource for lizard research
- MGI Mouse Genome Informatics
- National Animal Genome Research Program
- Pig Genome Coordination Program
- Pig Genome Resources
- Rabbit Genome Resources
- RGD Rat Genome Database
- Tetraodon Genome Browser
- UCSC Genome Bioinformatics
- VEGA Vertebrate Genome Annotation containing manual annotation of vertebrate finished genome sequence
- Xenbase a Xenopus web resource
- ZFIN Zebrafish Information Network
Non-Vertebrate Genome Databases and Browsers
Orthology and Comparative Genomics Resources
- Compare Multi Organism Information System
- EggNog evolutionary genealogy of genes: Non-supervised Orthologous Groups
- EnsemblCompara
- Evola Evolutionary annotation database
- Genomicus Genomes in evolution
- HCOP HGNC Comparison of Orthology Predictions
- HomoloGene
- Inparanoid eukaryotic ortholog groups
- IsoBase A Database of Functionally Related Orthologs
- Metazome database and graphical user interface enabling comparative genomic studies within the metazoa
- OMA (Orthologous Matrix project)
- OPTIC Clade genomics web server
- OrthoDB The Hierarchical Catalog of Eukaryotic Orthologs
- OrthoInspector
- OXGRID the Oxford Grid project
- P-POD Princeton Protein Orthology Database
- Panther Classification System
- PHOG PhyloFacts Orthology Group
- PhylomeDB
- TreeFam Tree families database
- VISTA Tools for Comparative Genomics
Other gene and nucleic acid resources
General gene and nucleic acid resources
- BioGPS Gene Portal System
- COSMIC Catalogue of Somatic Mutations in Cancer
- DDBJ DNA DataBank of Japan
- DECIPHER
- EMBL nucleotide sequence database
- GENATLAS database of human genes
- Gene Wiki dedicated to the goal of applying community intelligence to the annotation of gene and protein function
- GeneCards database of human genes
- GeneTests disease profile database
- GenomeNet Database Resources
- GHR Genetics Home Reference
- HGMD Human Gene Mutation Database
- HGVS database list Human Genome Variation Society
- IMGT/GENE-DB the international ImMunoGeneTics information system for immunoglobulins
- KEGG Kyoto Encyclopedia of Genes and Genomes
- NCBI GenBank
- OMIA Online Mendelian Inheritance In Animals
- OMIM Online Mendelian Inheritance in Man
- Pseudogene.org genome analysis
- RepBase database of repetitive DNA elements
- TGI the Gene Index Project
- UniGene unique human gene sequence collection
- Wikigenes
RNA-specific resources
- lncRNAdb provides comprehensive annotations of eukaryotic long non-coding RNAs (lncRNAs)
- miRBase microRNA database
- Non-coding RNA Database
- piRNABank A web resource on classified and clustered piRNAs
- Rfam RNA families database of alignments and CMs
- snoRNABase comprehensive database of human H/ACA and C/D box snoRNAs
Protein resources
- BRENDA the Comprehensive Enzyme Information System
- CATH protein structure classification
- CORUM Comprehensive Resource of Mammalian protein complexes
- Enzyme Portal Your portal to enzyme-related information at the EBI
- ExPASy Proteomics Server
- ExplorEnz the Enzyme Database
- Gene3D structural and functional annotation of protein families
- HPRD the Human Protein Reference Database
- HUGE database of Human Unidentified Gene-Encoded large proteins
- Human Proteinpedia a community portal for sharing and integration of human protein data
- HUPO Human Proteome Organisation
- iHOP Information Hyperlinked over Proteins
- InterPro database of protein families, domains and functional sites
- MEROPS a peptidase database
- NCBI Protein database
- NC-IUPHAR the International Committee of Pharmacology Committee on Receptor Nomenclature and Classification
- Neuropeptides
- PDB Protein Data Bank
- Pfam protein families database of alignments and HMMs
- PhosphoSitePlus A protein modification resource
- PIR Protein Information Resource
- PMDB Protein Model Database
- SCOP Structural Classification of Proteins
- Superfamily HMM library and genome assignments server
- SWISS-PROT ENZYME
- TRANSFAC (transcription factor database)
- UniProt the universal protein resource
Bioinformatics Analysis Tools
A list of journals related to genetics and genomics, highlighting those that enforce the use of approved nomenclature.
We have created this page to provide easy access to public engagement of science and related information on the Web.
Other Resources
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