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Genome Databases and Browsers
Human Genome Databases, Browsers and Variation Resources
Other Vertebrate Genome Databases and Browsers
- ARKdb species databases includes: Cat, Chicken, Cow, Deer, Horse, Pig, Salmon, Sheep, Tilapia, Turkey
- BirdBase A Database of Avian Genes and Genomes
- Bovmap mapping the Bovine genome
- Cat Genome Project
- Chicken Genome Resources
- The Dog Genome Project
- Ensembl genome databases for vertebrates and other eukaryotic species
- Entrez Gene searchable database of genes, from RefSeq genomes, defined by sequence and/or located in the NCBI Map Viewer
- Fugu the Fugu genomics project
- Horse Genome Project
- Kangaroo Genome Project
- lizardbase a centralized and consolidated informatics resource for lizard research
- MGI Mouse Genome Informatics
- National Animal Genome Research Program
- Pig Genome Coordination Program
- Pig Genome Mapping
- Pig Genome Resources
- Rabbit Genome Resources
- RGD Rat Genome Database
- Tetraodon Genome Browser
- UCSC Genome Bioinformatics
- VEGA Vertebrate Genome Annotation containing manual annotation of vertebrate finished genome sequence
- Xenbase a Xenopus web resource
- ZFIN Zebrafish Information Network
Non-Vertebrate Genome Databases and Browsers
Orthology and Comparative Genomics Resources
- Compare Multi Organism Information System
- EggNog evolutionary genealogy of genes: Non-supervised Orthologous Groups
- EnsemblCompara
- Evola Evolutionary annotation database
- Genomicus Genomes in evolution
- HCOP HGNC Comparison of Orthology Predictions
- HomoloGene
- Inparanoid eukaryotic ortholog groups
- IsoBase A Database of Functionally Related Orthologs
- Metazome database and graphical user interface enabling comparative genomic studies within the metazoa
- OMA (Orthologous Matrix project)
- OPTIC Clade genomics web server
- OrthoDB The Hierarchical Catalog of Eukaryotic Orthologs
- OrthoInspector
- OXGRID the Oxford Grid project
- P-POD Princeton Protein Orthology Database
- Panther Classification System
- PHOG PhyloFacts Orthology Group
- PhylomeDB
- TreeFam Tree families database
- VISTA Tools for Comparative Genomics
Other gene and nucleic acid resources
General gene and nucleic acid resources
RNA-specific resources
Protein resources
- BRENDA the Comprehensive Enzyme Information System
- CATH protein structure classification
- CORUM Comprehensive Resource of Mammalian protein complexes
- ExplorEnz the Enzyme Database
- Gene3D structural and functional annotation of protein families
- HPRD the Human Protein Reference Database
- HUGE database of Human Unidentified Gene-Encoded large proteins
- Human Proteinpedia a community portal for sharing and integration of human protein data
- HUPO Human Proteome Organisation
- iHOP Information Hyperlinked over Proteins
- InterPro database of protein families, domains and functional sites
- MEROPS a peptidase database
- NCBI Proteindatabase
- NC-IUPHAR the International Committee of Pharmacology Committee on Receptor Nomenclature and Classification
- Neuropeptides
- PDB Protein Data Bank
- Pfam protein families database of alignments and HMMs
- PhosphoSitePlus A protein modification resource
- PIR Protein Information Resource
- PMDB Protein Model Database
- SCOP Structural Classification of Proteins
- Superfamily HMM library and genome assignments server
- SWISS-PROT ENZYME
- TRANSFAC (transcription factor database)
- UniProt the universal protein resource
Bioinformatics Analysis Tools
A list of journals related to genetics and genomics, highlighting those that enforce the use of approved nomenclature.
Education Resources
Sites that provide a basic guide to genetics and general science:
DNA from the Beginning - An excellent animated site with general introductions to DNA, genes and heredity.
Genetic Science Learning Center - Introduces basic genetics and aims to help people understand how genetics affects their lives and society.
Genetics: Gateway to the Future - Explains basic genetics and explores such diverse topics as technology, ethics, forensics, careers in genetics, and genetic diseases. Also has an interactive game, quiz, and discussion forum.
Glossaries of Genome/Human Genetics Terms - Lists links to glossaries of genomics and human genetics terms.
Human Genome Project Information - Lots of information on the Human Genome Project. Includes its history, the science behind the project and the social issues that it creates. You can also print off a free chromosome poster.
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