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Genome Databases and Browsers

Orthology and Comparative Genomics Resources

Other gene and nucleic acid resources

Protein resources

Bioinformatics Analysis Tools

Journals

Education Resources

Other Resources

 


Genome Databases and Browsers

Human Genome Databases, Browsers and Variation Resources

Other Vertebrate Genome Databases and Browsers

Non-Vertebrate Genome Databases and Browsers

 


Orthology and Comparative Genomics Resources

  • CoGe comparative genomics resource
  • Compare Multi Organism Information System
  • EggNog evolutionary genealogy of genes: Non-supervised Orthologous Groups
  • EnsemblCompara
  • Evola Evolutionary annotation database
  • Genomicus Genomes in evolution
  • HCOP HGNC Comparison of Orthology Predictions
  • HomoloGene
  • Inparanoid eukaryotic ortholog groups
  • IsoBase A Database of Functionally Related Orthologs
  • Metazome database and graphical user interface enabling comparative genomic studies within the metazoa
  • OMA (Orthologous Matrix project)
  • OPTIC Clade genomics web server
  • OrthoDB The Hierarchical Catalog of Eukaryotic Orthologs
  • OrthoInspector
  • OXGRID the Oxford Grid project
  • P-POD Princeton Protein Orthology Database
  • Panther Classification System
  • PHOG PhyloFacts Orthology Group
  • PhylomeDB
  • TreeFam Tree families database
  • VISTA Tools for Comparative Genomics

 


Other gene and nucleic acid resources

General gene and nucleic acid resources

RNA-specific resources

  • antiCODE database of non-redundant natural sense-antisense transcript pairs
  • Genomic tRNA database contains tRNA gene predictions made by tRNAscan-SE
  • lncRNAdb provides comprehensive annotations of eukaryotic long non-coding RNAs (lncRNAs)
  • Mamit-tRNAdb compilation of mammalian mitochondrial tRNA genes
  • miRBase microRNA database
  • NATsDB repository of natural antisense transcripts (NATs)
  • ncRNA Expression Database (NRED) database of expression data on human and mouse long ncRNAs
  • Non-coding RNA Database
  • piRNABank web resource on classified and clustered piRNAs
  • Rfam RNA families database of alignments and CMs
  • RNAcentral resource to organise data for non-protein coding RNA genes
  • snoRNABase comprehensive database of human H/ACA and C/D box snoRNAs
  • Sno/scaRNAbase curated repository for small nucleolar RNAs and small cajal body-specific RNAs
  • TarBase curated database of experimentally supported microRNA targets

Protein resources

  • BRENDA the Comprehensive Enzyme Information System
  • CATH protein structure classification
  • CORUM Comprehensive Resource of Mammalian protein complexes
  • Enzyme Portal Your portal to enzyme-related information at the EBI
  • ExPASy Proteomics Server
  • ExplorEnz the Enzyme Database
  • Gene3D structural and functional annotation of protein families
  • HPRD the Human Protein Reference Database
  • HUGE database of Human Unidentified Gene-Encoded large proteins
  • Human Proteinpedia a community portal for sharing and integration of human protein data
  • HUPO Human Proteome Organisation
  • iHOP Information Hyperlinked over Proteins
  • InterPro database of protein families, domains and functional sites
  • IUPHAR the International Committee of Pharmacology Committee on Receptor Nomenclature and Classification
  • MEROPS a peptidase database
  • NCBI Protein database
  • Neuropeptides
  • PDB Protein Data Bank
  • Pfam protein families database of alignments and HMMs
  • PhosphoSitePlus A protein modification resource
  • PIR Protein Information Resource
  • PMDB Protein Model Database
  • SCOP Structural Classification of Proteins
  • Superfamily HMM library and genome assignments server
  • SWISS-PROT ENZYME
  • TRANSFAC (transcription factor database)
  • UniProt the universal protein resource

 


Bioinformatics Analysis Tools

 


Journals

 A list of journals related to genetics and genomics, highlighting those that enforce the use of approved nomenclature.

 


Education Resources

We have created this page to provide easy access to public engagement of science and related information on the Web.



Other Resources