Genome Databases

• ARKdb species databases includes: Cat, Chicken, Cow, Deer, Horse, Pig, Salmon, Sheep, Tilapia, Turkey
• Bovine Genome Project
• Bovmap mapping the Bovine genome
• Broad Institute Genome Sequence, Maps and Annotations
• Cat Genome Project
• Caenorhabditis Genome Sequencing Projects
• ChickMap the Chicken genome mapping project
• The Cotton Genome Database
• Dendrome A Forest Tree Genome Database
• The Dog Genome Project
• EcoGene the Database of Escherichia coli Sequence and Function
• Ensembl  human genes generated automatically by the Ensembl gene builder
• Entrez Gene is a searchable database of genes, from RefSeq genomes, and defined by sequence and/or located in the NCBI Map Viewer
• FlyBase a database of the Drosophila genome
• Fugu the Fugu genomics project
• GDB Genome Database
• GOBASE - The Organelle Genome Database
• H-Invitational Database an integrated database of human genes and transcripts
• Horse Genome Project
• Kangaroo Genome Project
• MedEvi - a permuted concordancer for Medline
• MGI Mouse Genome Informatics
• Pig Genome Coordination Program
• Pig Genome Mapping
• Pig Genome Resources
• Rabbit Genome Resources
• RATMAP Rat Genome Database
• RGD  Rat Genome Database
• SGD Saccharomyces cerevisiae Genome Database
• S. pombe GeneDB Schizosaccharomyces pombe Gene Database
• TAIR The Arabidopsis Information Resource
• UCSC Human Genome Browser provides BLAT analysis
• VEGA Vertebrate Genome Annotation containing manual annotation of different vertebrate finished genome sequence
• WormBase the biology and genome of C. Elegans
• Xenbase a Xenopus web resource
• ZFIN Zebrafish Information Network

Journal Links

Other

• AgBase a resource for functional analysis of agricultural plant and animal gene products
• AvianNET the avian information network
• Bioinformatic Harvester
• BRENDA The Comprehensive Enzyme Information System
• CATH protein structure classification
• Celera Genomics
• Citexplore - Citation Database
• COILS - prediction of coiled coil regions in proteins
• CORUM – Comprehensive Resource of Mammalian protein complexes
• Database of Genomic Variants
• DDBJ DNA DataBank of Japan
• SWISS-PROT ENZYME
• EcoCyc  Encyclopedia of Escherichia coli K12 genes and metabolism
• EMBL nucleotide sequence database
• ExplorEnz The Enzyme Database
• GENATLAS database of human genes
• Gene3D structural and functional annotation of protein families
• GeneCards database of human genes
• Gene Families/Groupings
• GeneTests disease profile database
• GenomeNet (Japan)
• GenProtEC E.Coli genome and proteome database
• GHR Genetics Home Reference
• GO Gene Ontology controlled vocabulary
• HapMap international HapMap Project
• HCDM Human Cell Differentiation Molecules
• HCOP HGNC Comparison of Orthology Predictions
• HGMD Human Gene Mutation Database
• HGVbase Human Genome Variation database
• Human Genome Variation Society
• H-InvDB H-Invitational Database
• HORDE the Human Olfactory Receptor Data Exploratorium
• HPRD the Human Protein Reference Database
• HUGE database of Human Unidentified Gene-Encoded large proteins
• Human Genome Segmental Duplication Database
• Human Intermediate Filament Database
• Human Proteinpedia a community portal for sharing and integration of human
  protein data
• Human Structural Variation Database
• HUPO Human Proteome Organisation
• iHOP Information Hyperlinked over Proteins
• IMGT integrated database for immunogenetics
• Inparanoid eukaryotic ortholog groups
• InterPro database of protein families, domains and functional sites
• IntEnz Integrated relational Enzyme database
• IUBMB International Union of Biochemistry and Molecular Biology
• IUPHAR International Union of Pharmacology
• KEGG Kyoto Encyclopedia of Genes and Genomes
• KZNF Kruppel-type Zinc Finger gene catolog
• LDB2000 sequence-based integration maps of the human genome
• MEROPS a peptidase database
• MetaDB a metadatabase for biological sciences
• Metazome database and graphical user interface enabling comparative genomic studies within the metazoa
• miRBase microRNA database
• NCBI BLAST
• NCBI Entrez
• NCBI GenBank
• NCBI Map Viewer
• NC-IUPHAR The International Committee of Pharmacology Committee on Receptor Nomenclature and Classification
• Neuropeptides
• Non-coding RNA Database
• OMA (Orthologousy Matrix project)
• OMIA Online Mendelian Inheritance In Animals
• OMIM Online Mendelian Inheritance in Man
• Oxford Grid retrieve an Oxford Grid (MGI)
• OXGRID the Oxford Grid project
• PDB Protein Data Bank
• Pfam protein families database of alignments and HMMs
• Phigs Phylogenetically Inferred Groups
• PhosphoSite database of protein phosphorylation sites
• PIR Protein Information Resource
• PMDB Protein Model Database
• PROSITE database of protein families and domains
• Pseudogene.org genome analysis
• QuickGO EMBL-EBI Gene Ontology browser
• Reactome knowledgebase of biological processes
• Rfam RNA families database of alignments and CMs
• RIKEN
• RNAdb
• SCOP Structural Classification of Proteins
• SMART Simple Modular Architecture Research Tool
• snoRNABase comprehensive database of human H/ACA and C/D box snoRNAs
• SOSUI - transmembrane prediction server
• Superfamily HMM library and genome assignments server
• SWISS-PROT, TrEMBL or search by SWISS-PROT description or identification
• TIGR The Institute for Genomic Research
• TreeFam Tree Families database
• tRNAscan-SE
• UCL Bioinformatics Unit
• UCSD-Nature Signaling Gateway
• UniGene unique human gene sequence collection
• UniProt the universal protein resource
• VISTA tools for comparative genomics
• 2ZIP leucine zipper prediction server