Gene Family: Long non-coding RNAs
Also known as :
"lncRNAs",
"long ncRNAs",
"Long non coding RNAs"
A subset of
:
Non-coding RNAs
Long non-coding RNA: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides (Perkel 2013). [Source: Wikipedia]
Genes contained within the family: 292
| Approved Symbol | Approved Name | Previous Symbols | Synonyms | Chromosome |
|---|---|---|---|---|
| AATBC | apoptosis associated transcript in bladder cancer | 21q22.3 | ||
| ABALON | apoptotic BCL2L1-antisense long non-coding RNA | INXS | 20q11.21 | |
| ABHD11-AS1 | ABHD11 antisense RNA 1 (tail to tail) | WBSCR26, LINC00035 | NCRNA00035 | 7q11.23 |
| AFAP1-AS1 | AFAP1 antisense RNA 1 | AFAP1AS, AFAP1-AS | MGC10981 | 4p16.1 |
| AIRN | antisense of IGF2R non-protein coding RNA | AIR, NCRNA00088, IGF2RAS, IGF2R-AS1 | 6q25.3 | |
| APOA1-AS | APOA1 antisense RNA | 11q23.3 | ||
| APTR | Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) | RSBN1L-AS1 | 7q11.23 | |
| ATXN8OS | ATXN8 opposite strand (non-protein coding) | SCA8, KLHL1AS | NCRNA00003 | 13q21.33 |
| BACE1-AS | BACE1 antisense RNA | BACE1AS | FJ573250, NCRNA00177, BACE1-AS1 | 11q23.3 |
| BANCR | BRAF-activated non-protein coding RNA | LINC00586 | 9q21.11-q21.12 | |
| BCYRN1 | brain cytoplasmic RNA 1 | BC200, BC200a, NCRNA00004, LINC00004 | 2p21 | |
| BDNF-AS | BDNF antisense RNA | BDNFOS | BT2A, BT2B, BT2C, BT2D, NCRNA00049, BDNF-AS1, BDNFAS | 11p14.1 |
| BGLT3 | beta globin locus transcript 3 (non-protein coding) | LINC01083, BGL3, lncRNA-BGL3 | 11p15.4 | |
| BIRC6-AS2 | BIRC6 antisense RNA 2 | megamind | 2p22.3 | |
| BISPR | BST2 interferon stimulated positive regulator (non-protein coding) | 19p13.11 | ||
| BLACAT1 | bladder cancer associated transcript 1 (non-protein coding) | linc-UBC1, LINC00912, onco-lncRNA-30 | 1q32.1 | |
| BPESC1 | blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) | NCRNA00187 | 3q23 | |
| BRE-AS1 | BRE antisense RNA 1 | 2p23.2 | ||
| B4GALT1-AS1 | B4GALT1 antisense RNA 1 | 9p21.1 | ||
| CAHM | colon adenocarcinoma hypermethylated (non-protein coding) | LINC00468 | 6q26 | |
| CARMN | cardiac mesoderm enhancer-associated non-coding RNA | MIR143HG | CARMEN | 5q32 |
| CASC8 | cancer susceptibility 8 (non-protein coding) | LINC00860, CARLo-1 | 8q24.21 | |
| CASC11 | cancer susceptibility 11 (non-protein coding) | TCONS_00014535, LINC00990, CARLo-7, ENST00000518376 | 8q24.21 | |
| CASC15 | cancer susceptibility 15 (non-protein coding) | LINC00340 | lnc-SOX4-1 | 6p22.3 |
| CASC19 | cancer susceptibility 19 (non-protein coding) | LINC01245 | CARLo-6 | 8q24.21 |
| CASC21 | cancer susceptibility 21 (non-protein coding) | LINC01244 | CARLo-2 | 8q24.21 |
| CASC22 | cancer susceptibility 22 (non-protein coding) | LINC01373 | TCONS_00024290, LincRNA-ENST00000515084 | 16q12.1 |
| CCAT1 | colon cancer associated transcript 1 (non-protein coding) | CARLo-5, onco-lncRNA-40 | 8q24.21 | |
| CCAT2 | colon cancer associated transcript 2 (non-protein coding) | NCCP1, LINC00873 | 8q24.21 | |
| CCND2-AS1 | CCND2 antisense RNA 1 | 12p13.32 | ||
| CDKN2B-AS1 | CDKN2B antisense RNA 1 | CDKN2BAS | ANRIL, RP11-145E5.4, NCRNA00089, p15AS, CDKN2B-AS, PCAT12 | 9p21.3 |
| CDR1-AS | CDR1 antisense RNA | CDR1NAT, ciRS-7, CDR1as | Xq27.1 | |
| CISTR | chondrogenesis-associated transcript | CISTR-ACT, CISTRACT, re52431 | 12q13.13 | |
| CLMAT3 | colorectal liver metastasis associated transcript 3 | SPARC-AS1 | 5q33.1 | |
| CRNDE | colorectal neoplasia differentially expressed | LOC643911, LINC00180, CRNDEP | 16q12.2 | |
| CTBP1-AS | CTBP1 antisense RNA | PCAT10 | 4p16.3 | |
| CYP4A22-AS1 | CYP4A22 antisense RNA 1 | ncRNA-a3 | 1p33 | |
| CYTOR | cytoskeleton regulator RNA | C2orf59, NCRNA00152, LINC00152 | MGC4677 | 2p11.2 |
| CYYR1-AS1 | cysteine and tyrosine rich 1 antisense RNA 1 | 21q21.3 | ||
| DACOR1 | DNMT1-associated colon cancer repressed lncRNA 1 | TCONS_00023265 | 15q22.33 | |
| DALIR | DNMT1-associated long intergenic non-coding RNA | DALI | 2q12 | |
| DANCR | differentiation antagonizing non-protein coding RNA | KIAA0114, SNHG13 | ANCR, AGU2, lncRNA-ANCR | 4q12 |
| DANT1 | DXZ4 associated non-coding transcript 1, proximal | Xq23 | ||
| DANT2 | DXZ4 associated non-coding transcript 2, distal | Xq23 | ||
| DARS-AS1 | DARS antisense RNA 1 | 2q21.3 | ||
| DBET | D4Z4 binding element transcript (non-protein coding) | DBE-T, DUX4L30 | 4q35.2 | |
| DBH-AS1 | DBH antisense RNA 1 | NCRNA00118 | BPR | 9q34.2 |
| DDIT4-AS1 | DDIT4 antisense RNA 1 | RP11-442H21.2 | 10q22.1 | |
| DDX11-AS1 | DDX11 antisense RNA 1 | CONCR | 12p11.21 | |
| DGCR5 | DiGeorge syndrome critical region gene 5 (non-protein coding) | NCRNA00037, LINC00037 | 22q11.21 | |
| DHRS4-AS1 | DHRS4 antisense RNA 1 | C14orf167 | PRO1488, AS1DHRS4 | 14q11.2 |
| DINOL | damage induced long noncoding RNA | DINO | 6p21.2 | |
| DIO3OS | DIO3 opposite strand/antisense RNA (head to head) | C14orf134 | NCRNA00041, DIO3-AS1 | 14q32.31 |
| DISC2 | disrupted in schizophrenia 2 (non-protein coding) | DISC1-AS1, DISC1OS, NCRNA00015 | 1q42.1 | |
| DLEU1 | deleted in lymphocytic leukemia 1 (non-protein coding) | DLB1, BCMS | LEU1, XTP6, NCRNA00021, LINC00021, BCMS1 | 13q14.2-q14.3 |
| DLEU2 | deleted in lymphocytic leukemia 2 (non-protein coding) | DLB2, BCMSUN, RFP2OS | LEU2, TRIM13OS, NCRNA00022, LINC00022, MIR15AHG | 13q14.2 |
| DLG2-AS1 | DLG2 antisense RNA 1 | DLG2AS, DLG2-AS | PSZA11q14, SZ-1 | 11q14.1 |
| DLX6-AS1 | DLX6 antisense RNA 1 | NCRNA00212 | FLJ34048, Evf-2 | 7q21.3 |
| DRAIC | downregulated RNA in cancer, inhibitor of cell invasion and migration | 15q23 | ||
| DSCAM-AS1 | DSCAM antisense RNA 1 | M41 | 21q22.2 | |
| EGFR-AS1 | EGFR antisense RNA 1 | 7p11.2 | ||
| EGOT | eosinophil granule ontogeny transcript (non-protein coding) | EGO, NCRNA00190 | 3p26.1 | |
| EMX2OS | EMX2 opposite strand/antisense RNA | NCRNA00045, EMX2-AS1 | 10q26.11 | |
| ERICD | E2F1-regulated inhibitor of cell death (non-protein coding) | LINC01130 | TCONS_00014875, ERIC | 8q24.3 |
| ESRG | embryonic stem cell related (non-protein coding) | HESRG | 3p14.3 | |
| EWSAT1 | Ewing sarcoma associated transcript 1 | TMEM84, NCRNA00277, LINC00277 | FLJ33768 | 15q23 |
| FALEC | focally amplified long non-coding RNA in epithelial cancer | LINC00568 | ncRNA-a1, FAL1 | 1q21.2 |
| FAM83H-AS1 | FAM83H antisense RNA 1 (head to head) | onco-lncRNA-3 | 8q24.3 | |
| FAS-AS1 | FAS antisense RNA 1 | FASAS, FAS-AS | SAF | 10q23.31 |
| FBXL19-AS1 | FBXL19 antisense RNA 1 (head to head) | NCRNA00095 | MGC125469, MGC125470, MGC125472 | 16p11.2 |
| FENDRR | FOXF1 adjacent non-coding developmental regulatory RNA | FOXF1-AS1 | lincFOXF1, onco-lncRNA-21 | 16q24.1 |
| FEZF1-AS1 | FEZF1 antisense RNA 1 | 7q31.32 | ||
| FGF14-AS2 | FGF14 antisense RNA 2 | 13q33.1 | ||
| FIRRE | firre intergenic repeating RNA element | LINC01200 | Xq26.2 | |
| FLICR | FOXP3 regulating long intergenic non-coding RNA | Xp11.23 | ||
| FMR1-AS1 | FMR1 antisense RNA 1 (head to head) | FMR1AS, FMR1-AS | ASFMR1, FMR4 | Xq27.3 |
| FOXCUT | FOXC1 upstream transcript (non-protein coding) | LINC01379 | TCONS_00011636 | 6p25.3 |
| FOXD3-AS1 | FOXD3 antisense RNA 1 (head to head) | pasFOXD3 | 1p31.3 | |
| FOXP4-AS1 | FOXP4 antisense RNA 1 | 6p21.1 | ||
| FTX | FTX transcript, XIST regulator (non-protein coding) | NCRNA00182, MIR374AHG | LINC00182, FLJ33139 | Xq13.2 |
| GACAT1 | gastric cancer associated transcript 1 (non-protein coding) | LINC00876, AC096655.1-002 | 2q12.3 | |
| GACAT2 | gastric cancer associated transcript 2 (non-protein coding) | MTCL1-AS1 | HMlincRNA717 | 18p11.22 |
| GACAT3 | gastric cancer associated transcript 3 (non-protein coding) | LINC01458 | lncRNA-AC130710 | 2p24.3 |
| GAPLINC | gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA | LINC01540 | TCONS_00026238, lncRNA-uc002kmd.1 | 18p11.31 |
| GAS1RR | GAS1 adjacent regulatory RNA | LncRNA-Hh | 9q21.33 | |
| GAS5 | growth arrest specific 5 (non-protein coding) | SNHG2, NCRNA00030 | 1q25.1 | |
| GCASPC | gall bladder cancer associated suppressor of pyruvate carboxylase lncRNA | TCONS_00011605, RP1-56L9.7-001, lnc-SOD2-1 | 6q25.3 | |
| GHET1 | gastric carcinoma proliferation enhancing transcript 1 | lncRNA-GHET1 | 7q36.1 | |
| GHRLOS | ghrelin opposite strand/antisense RNA | NCRNA00068, GHRL-AS1 | 3p25.3 | |
| GNAS-AS1 | GNAS antisense RNA 1 | GNASAS, GNAS-AS | SANG, NESP-AS, NESPAS, GNAS1AS, NCRNA00075 | 20q13.32 |
| GNG12-AS1 | GNG12 antisense RNA 1 | 1p31.3 | ||
| GPR1-AS | GPR1 antisense RNA | GPR1-AS1 | GPR1AS | 2q33.3 |
| GSEC | G-quadruplex forming sequence containing lncRNA | ST3GAL4-AS1 | DCPS-AS1, FLJ39051 | 11q24.2 |
| HAGLR | HOXD antisense growth-associated long non-coding RNA | HOXD-AS1 | Mdgt | 2q31.1 |
| HAR1A | highly accelerated region 1A (non-protein coding) | HAR1F, NCRNA00064, LINC00064 | 20q13.33 | |
| HAR1B | highly accelerated region 1B (non-protein coding) | HAR1R, NCRNA00065, LINC00065 | 20q13.33 | |
| HAS2-AS1 | HAS2 antisense RNA 1 | HAS2AS, HAS2-AS | HASNT, NCRNA00077 | 8q24.13 |
| HEIH | hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA | LINC-HEIH, lncRNA-HEIH, LINC00848, HCCAT2 | 5q35.3 | |
| HIF1A-AS1 | HIF1A antisense RNA 1 | 5'aHIF-1A | 14q23.2 | |
| HIF1A-AS2 | HIF1A antisense RNA 2 | 3'aHIF-1A, aHIF | 14q23.2 | |
| HMMR-AS1 | HMMR antisense RNA 1 | 5q34 | ||
| HNF1A-AS1 | HNF1A antisense RNA 1 | C12orf27, NCRNA00262 | FLJ38690, HAS1 | 12q24.31 |
| HOTAIR | HOX transcript antisense RNA | HOXC-AS4, HOXC11-AS1, NCRNA00072 | 12q13.13 | |
| HOTAIRM1 | HOXA transcript antisense RNA, myeloid-specific 1 | HOXA-AS1, NCRNA00179, HOXA1-AS1 | 7p15.2 | |
| HOTTIP | HOXA distal transcript antisense RNA | NCRNA00213 | HOXA-AS6, RP1-170O19.3, HOXA13-AS1 | 7p15.2 |
| HOXA-AS2 | HOXA cluster antisense RNA 2 | HOXA3as | 7p15.2 | |
| HOXA-AS3 | HOXA cluster antisense RNA 3 | HOXA6as | 7p15.2 | |
| HOXA11-AS | HOXA11 antisense RNA | HOXA11AS | HOXA11-AS1, HOXA11S, HOXA-AS5, NCRNA00076 | 7p15.2 |
| HOXC-AS1 | HOXC cluster antisense RNA 1 | 12q13.13 | ||
| HULC | hepatocellular carcinoma up-regulated long non-coding RNA | NCRNA00078, LINC00078, HCCAT1 | 6p24.3 | |
| H19 | H19, imprinted maternally expressed transcript (non-protein coding) | D11S813E, ASM, ASM1, NCRNA00008, LINC00008 | 11p15.5 | |
| IFNG-AS1 | IFNG antisense RNA 1 | Tmevpg1, LincR-Ifng-3'AS, NEST | 12q15 | |
| IGF2-AS | IGF2 antisense RNA | IGF2AS | PEG8, IGF2-AS1 | 11p15.5 |
| IPW | imprinted in Prader-Willi syndrome (non-protein coding) | NCRNA00002 | 15q11.2 | |
| IRAIN | IGF1R antisense imprinted non-protein coding RNA | IGF1R-AS | 15q26.3 | |
| ITFG2-AS1 | ITFG2 antisense RNA 1 | 12p13.33 | ||
| JADRR | JADE1 adjacent regulatory RNA | LINC00915 | lncRNA-JADE | 4q28.2 |
| JPX | JPX transcript, XIST activator (non-protein coding) | NCRNA00183 | ENOX, LINC00183, DCBALD06 | Xq13.2 |
| KANTR | KDM5C adjacent transcript | LINC01155 | Spasm | Xp11.22 |
| KCNIP4-IT1 | KCNIP4 intronic transcript 1 | NCRNA00099 | UM9-5 | 4p15.2 |
| KCNQ1OT1 | KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) | KvDMR1, KCNQ1-AS2, KvLQT1-AS, LIT1, NCRNA00012 | 11p15.5 | |
| KRT7-AS | KRT7 antisense RNA 1 | 12q13.13 | ||
| LCAL1 | lung cancer associated lncRNA 1 | onco-lncRNA-27 | 6q14.1 | |
| LINCMD1 | long intergenic non-protein coding RNA, muscle differentiation 1 | MIR133BHG, LINC-MD1 | 6p12.2 | |
| LINC-PINT | long intergenic non-protein coding RNA, p53 induced transcript | MKLN1-AS1 | FLJ43663, PINT, LincRNA-Pint | 7q32.3 |
| LINC-ROR | long intergenic non-protein coding RNA, regulator of reprogramming | lincRNA-RoR, lincRNA-ST8SIA3, ROR | 18q21.31 | |
| LINC00161 | long intergenic non-protein coding RNA 161 | C21orf100, NCRNA00161 | 21q21.3 | |
| LINC00163 | long intergenic non-protein coding RNA 163 | C21orf134, NCRNA00163 | NLC1-A, NLC1A | 21q22.3 |
| LINC00165 | long intergenic non-protein coding RNA 165 | C21orf135, NCRNA00165 | NLC1-B | 21q22.3 |
| LINC00261 | long intergenic non-protein coding RNA 261 | C20orf56, NCRNA00261 | bA216C10.1, HCCDR1, TCONS_00027846, ALIEN, DEANR1, onco-lncRNA-17 | 20p11.21 |
| LINC00305 | long intergenic non-protein coding RNA 305 | C18orf20, NCRNA00305 | MGC39571, HsT1235 | 18q22.1 |
| LINC00312 | long intergenic non-protein coding RNA 312 | LOH3CR2A, NCRNA00312 | NAG7, NAG-7, ERR10, ERR-10, LMCD1DN | 3p25.3 |
| LINC00473 | long intergenic non-protein coding RNA 473 | C6orf176 | bA142J11.1 | 6q27 |
| LINC00511 | long intergenic non-protein coding RNA 511 | onco-lncRNA-12 | 17q24.3 | |
| LINC00570 | long intergenic non-protein coding RNA 570 | ncRNA-a5 | 2p25.1 | |
| LINC00581 | long intergenic non-protein coding RNA 581 | 6p22.3 | ||
| LINC00598 | long intergenic non-protein coding RNA 598 | TTL | 13q14.11 | |
| LINC00599 | long intergenic non-protein coding RNA 599 | Rncr3 | 8p23.1 | |
| LINC00629 | long intergenic non-protein coding RNA 629 | Xq26.3 | ||
| LINC00672 | long intergenic non-protein coding RNA 672 | 17q12 | ||
| LINC00673 | long intergenic non-protein coding RNA 673 | HI-LNC75, SLNCR1 | 17q24.3 | |
| LINC00850 | long intergenic non-protein coding RNA 850 | KUCG1 | Xq28 | |
| LINC00853 | long intergenic non-protein coding RNA 853 | PDZK1IP1-AS1 | ncRNA-a4 | 1p33 |
| LINC01080 | long intergenic non-protein coding RNA 1080 | TCONS_00021856 | 13q31.1 | |
| LINC01105 | long intergenic non-protein coding RNA 1105 | FLJ30594, LOC150622 | 2p25.2 | |
| LINC01116 | long intergenic non-protein coding RNA 1116 | TALNEC2 | 2q31.1 | |
| LINC01133 | long intergenic non-protein coding RNA 1133 | 1q23.2 | ||
| LINC01139 | long intergenic non-protein coding RNA 1139 | LINK-A, TCONS_00000027 | 1q43 | |
| LINC01157 | long intergenic non-protein coding RNA 1157 | TCONS_00010378, linc-Enc1 | 5q13.3 | |
| LINC01186 | long intergenic non-protein coding RNA 1186 | Xp11.3 | ||
| LINC01191 | long intergenic non-protein coding RNA 1191 | VIN, lnc-ACTR3 | 2q14.1 | |
| LINC01844 | long intergenic non-protein coding RNA 1844 | LOC101926975 | 5q31.3 | |
| LINP1 | lncRNA in non-homologous end joining pathway 1 | 10p14 | ||
| LNCPRESS1 | lncRNA p53 regulated and ESC associated 1 | lncPRESS1 | 7q22.1 | |
| LNCPRESS2 | lncRNA p53 regulated and ESC associated 2 | lncPRESS2 | 4q22.1 | |
| LNCSRLR | lncRNA sorafenib resistance in renal cell carcinoma associated | lncRNA-SRLR | 3q24 | |
| LRP1-AS | LRP1 antisense RNA | 12q13.3 | ||
| LSINCT5 | long stress-induced non-coding transcript 5 | 5p15.33 | ||
| LUADT1 | lung adenocarcinoma associated transcript 1 | 6q24.3 | ||
| LUCAT1 | lung cancer associated transcript 1 (non-protein coding) | SCAL1 | 5q14.3 | |
| LUNAR1 | leukemia-associated non-coding IGF1R activator RNA 1 | 15q26.3 | ||
| MAFTRR | MAF transcriptional regulator RNA | linc-MAF-4 | 16q23.2 | |
| MALAT1 | metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) | PRO1073, MALAT-1, NCRNA00047, HCN, NEAT2, LINC00047, mascRNA | 11q13.1 | |
| MEG3 | maternally expressed 3 (non-protein coding) | GTL2, NCRNA00023, LINC00023, onco-lncRNA-83 | 14q32.2 | |
| MEG8 | maternally expressed 8, small nucleolar RNA host gene | SNHG23, SNHG24 | NCRNA00024, Irm, Rian, Bsr, LINC00024, AL132709.8, lnc-MGC | 14q32.31 |
| MEG9 | maternally expressed 9 (non-protein coding) | LINC00584 | 14q32.31 | |
| MHRT | myosin heavy chain-associated RNA transcript | Myheart | 14q11.2 | |
| MIAT | myocardial infarction associated transcript (non-protein coding) | C22orf35 | FLJ25967, Rncr2, gomafu, NCRNA00066, LINC00066, lncRNA-MIAT | 22q12.1 |
| MIF-AS1 | MIF antisense RNA 1 | LOC284889, MIF-AS | 22q11.23 | |
| MINCR | MYC-induced long non-coding RNA | LINC01604 | TCONS_00015189 | 8q24.3 |
| MIR17HG | miR-17-92a-1 cluster host gene | C13orf25, MIRHG1 | FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048 | 13q31.3 |
| MIR22HG | MIR22 host gene | C17orf91 | MGC14376, DKFZp686O06159 | 17p13.3 |
| MIR31HG | MIR31 host gene | LOC554202, hsa-lnc-31, LncHIFCAR | 9p21.3 | |
| MIR99AHG | mir-99a-let-7c cluster host gene | C21orf35, FLJ38295, C21orf34, LINC00478 | MONC | 21q21.1 |
| MIR100HG | mir-100-let-7a-2-mir-125b-1 cluster host gene | AGD1, lncRNA-N2, linc-NeD125 | 11q24.1 | |
| MIR155HG | MIR155 host gene | MIRHG2 | BIC, NCRNA00172 | 21q21.3 |
| MIR222HG | MIR222 host gene | Lnc-Ang362 | Xp11.3 | |
| MIR503HG | MIR503 host gene | MGC16121, H19X | Xq26.3 | |
| MIR600HG | MIR600 host gene | C9orf45, NCRNA00287 | GL012, FLJ22161 | 9q33.3 |
| MIR2052HG | MIR2052 host gene | 8q21.11-q21.13 | ||
| MIR4435-2HG | MIR4435-2 host gene | MIR4435-1HG | LINC00978, AGD2, AK001796, lncRNA-AWPPH, MORRBID | 2q13 |
| MT-LIPCAR | mitochondrially encoded long non-coding cardiac associated RNA | uc022bqs.1, LIPCAR | mitochondria | |
| MYCNOS | MYCN opposite strand | NCYM, N-CYM, MYCN-AS1 | 2p24.3 | |
| MYCNUT | MYCN upstream transcript (non-protein coding) | MYCNUN | lncUSMycN | 2p24.3 |
| MYOSLID | myocardin-induced smooth muscle lncRNA, inducer of differentiation | 2q33.3 | ||
| NALT1 | NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1 | MIR4674HG, LINC01573 | TCONS_l2_00029132 | 9q34.3 |
| NAMA | non-protein coding RNA, associated with MAP kinase pathway and growth arrest | 9q22.33 | ||
| NBAT1 | neuroblastoma associated transcript 1 | CASC14 | NBAT-1 | 6p22.3 |
| NBR2 | neighbor of BRCA1 gene 2 (non-protein coding) | NCRNA00192 | 17q21.31 | |
| NCRUPAR | non-protein coding RNA, upstream of F2R/PAR1 | ncR-uPAR, ncRuPAR, NCRNA00193 | 5q13.3 | |
| NEAT1 | nuclear paraspeckle assembly transcript 1 (non-protein coding) | NCRNA00084 | TncRNA, MENepsilon/beta, LINC00084, VINC | 11q13.1 |
| NFIA-AS1 | NFIA antisense RNA 1 | RP5-833A20.1 | 1p31.3 | |
| NKILA | NF-kappaB interacting lncRNA | 20q13.31 | ||
| NNT-AS1 | NNT antisense RNA 1 | 5p12 | ||
| NORAD | non-coding RNA activated by DNA damage | LINC00657 | 20q11.23 | |
| NRAV | negative regulator of antiviral response (non-protein coding) | DYNLL1-AS1 | 12q24.31 | |
| NRIR | negative regulator of interferon response (non-protein coding) | lncRNA-CMPK2 | 2p25.2 | |
| NRON | non-protein coding RNA, repressor of NFAT | NCRNA00194 | 9q33.3 | |
| OIP5-AS1 | OIP5 antisense RNA 1 | cyrano, linc-OIP5 | 15q15.1 | |
| OLMALINC | oligodendrocyte maturation-associated long intergenic non-coding RNA | C10orf75, NCRNA00263, LINC00263 | bA34D15.5, FLJ12974, HI-LNC80 | 10q24.31 |
| OTX2-AS1 | OTX2 antisense RNA 1 (head to head) | OTX2OS1 | 14q22.3 | |
| OVAAL | ovarian adenocarcinoma amplified long non-coding RNA | LINC01131, OVAL | 1q25.3 | |
| PACERR | PTGS2 antisense NFKB1 complex-mediated expression regulator RNA | PACER, PTGS2-AS1 | 1q31.1 | |
| PANCR | PITX2 adjacent non-coding RNA | 4q25 | ||
| PANDAR | promoter of CDKN1A antisense DNA damage activated RNA | PANDA | 6p21.2 | |
| PARTICL | promoter of MAT2A antisense radiation-induced circulating long non-coding RNA | PARTICLE | 2p11.2 | |
| PART1 | prostate androgen-regulated transcript 1 (non-protein coding) | DKFZP586D0823, NCRNA00206 | 5q12.1 | |
| PAUPAR | PAX6 upstream antisense RNA | 11p13 | ||
| PCAT1 | prostate cancer associated transcript 1 (non-protein coding) | PCAT-1, PCA1 | 8q24.21 | |
| PCAT4 | prostate cancer associated transcript 4 (non-protein coding) | GDEP, PCAN1, PCA4 | 4q21.21 | |
| PCAT5 | prostate cancer associated transcript 5 (non-protein coding) | LINC01452 | TPCAT-10-36067 | 10p11.21 |
| PCAT6 | prostate cancer associated transcript 6 (non-protein coding) | KDM5B-AS1 | ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96 | 1q32.1 |
| PCAT7 | prostate cancer associated transcript 7 (non-protein coding) | PCAN-R2 | 9q22.32 | |
| PCAT14 | prostate cancer associated transcript 14 (non-protein coding) | 22q11.23 | ||
| PCAT18 | prostate cancer associated transcript 18 (non-protein coding) | LINC01092 | 18q11.2 | |
| PCAT29 | prostate cancer associated transcript 29 (non-protein coding) | 15q23 | ||
| PCA3 | prostate cancer associated 3 (non-protein coding) | DD3, NCRNA00019, PCAT3 | 9q21.2 | |
| PCGEM1 | PCGEM1, prostate-specific transcript (non-protein coding) | NCRNA00071, LINC00071, PCAT9 | 2q32.3 | |
| PCSK6-AS1 | PCSK6 antisense RNA 1 | 15q26.3 | ||
| PEG13 | paternally expressed 13 | 8q24.3 | ||
| PGR-AS1 | PGR antisense RNA 1 | AT1, AT2, AT3 | 11q22.1 | |
| PICSAR | P38 inhibited cutaneous squamous cell carcinoma associated lincRNA | C21orf113, NCRNA00162, LINC00162 | PRED74, NLC1-C | 21q22.3 |
| PINCR | p53-induced noncoding RNA | Xp11.3 | ||
| PINK1-AS | PINK1 antisense RNA | PINK1-AS1 | FLJ00387, PINK1AS, naPINK1 | 1p36.12 |
| POU6F2-AS2 | POU6F2 antisense RNA 2 | FLJ12971 | 7p14.1 | |
| PPP1R12A-AS1 | PPP1R12A antisense RNA 1 | R12A-AS1 | 12q21.31 | |
| PRAL | p53 regulation associated lncRNA | lncRNA-PRAL | 17p13.1 | |
| PRINS | psoriasis associated non-protein coding RNA induced by stress | NCRNA00074 | 10p12.1 | |
| PRNCR1 | prostate cancer associated non-coding RNA 1 | PCAT8 | 8q24.21 | |
| PRNT | prion locus lncRNA, testis expressed | M8 | 20p13 | |
| PSMD6-AS1 | PSMD6 antisense RNA 1 | ENST00000462717, lnc00462717 | 3p14.1 | |
| PTCSC1 | papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) | PTCSC | AK023948, NCRNA00197 | 8q24 |
| PTCSC2 | papillary thyroid carcinoma susceptibility candidate 2 (non-protein coding) | 9q22.33 | ||
| PTCSC3 | papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) | 14q13.3 | ||
| PTENP1-AS | PTENP1 antisense RNA | PTENpg1-asRNA | 9p13.3 | |
| PVT1 | Pvt1 oncogene (non-protein coding) | NCRNA00079, LINC00079, onco-lncRNA-100, MIR1204HG | 8q24.21 | |
| PWARSN | Prader Willi/Angelman region RNA, SNRPN neighbor | PAR-SN, PARSN | 15q11.2 | |
| PWAR1 | Prader Willi/Angelman region RNA 1 | PAR1, PAR-1 | 15q11.2 | |
| PWAR5 | Prader Willi/Angelman region RNA 5 | PAR5, PAR-5 | 15q11.2 | |
| PWRN1 | Prader-Willi region non-protein coding RNA 1 | NCRNA00198 | 15q11.2 | |
| PWRN2 | Prader-Willi region non-protein coding RNA 2 | NCRNA00199 | 15q11.2 | |
| RAMP2-AS1 | RAMP2 antisense RNA 1 | 17q21.2 | ||
| RASSF1-AS1 | RASSF1 antisense RNA 1 | ANRASSF1 | 3p21.3 | |
| RGMB-AS1 | RGMB antisense RNA 1 | 5q15 | ||
| RMST | rhabdomyosarcoma 2 associated transcript (non-protein coding) | NCRMS, NCRNA00054, LINC00054 | 12q23.1 | |
| RPS6KA2-AS1 | RPS6KA2 antisense RNA 1 | 6q27 | ||
| SALRNA1 | senescence associated long non-coding RNA 1 | SAL-RNA1, XLOC_023166 | 14q23.1 | |
| SAMMSON | survival associated mitochondrial melanoma specific oncogenic non-coding RNA | LINC01212 | 3p13 | |
| SATB2-AS1 | SATB2 antisense RNA 1 | 2q33.1 | ||
| SCAANT1 | SCA7/ATXN7 antisense RNA 1 | ATXN7-AS1 | 3p14.1 | |
| SCHLAP1 | SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) | LINC00913 | SChLAP1, PCAT11 | 2q31.3 |
| SENCR | smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA | FLI1-AS1 | 11q24.3 | |
| SMILR | smooth muscle induced lncRNA, enhancer of proliferation | 8q24.13 | ||
| SNHG1 | small nucleolar RNA host gene 1 | UHG, NCRNA00057, LINC00057, lncRNA16 | 11q12.3 | |
| SNHG3 | small nucleolar RNA host gene 3 | RNU17D, RNU17C | U17HG, U17HG-A, NCRNA00014 | 1p35.3 |
| SNHG4 | small nucleolar RNA host gene 4 | U19H, NCRNA00059 | 5q31.2 | |
| SNHG5 | small nucleolar RNA host gene 5 | C6orf160 | MGC16362, bA33E24.2, U50HG, NCRNA00044, LINC00044 | 6q14.3 |
| SNHG6 | small nucleolar RNA host gene 6 | U87HG, HBII-276HG, NCRNA00058 | 8q13.1 | |
| SNHG8 | small nucleolar RNA host gene 8 | NCRNA00060, LINC00060 | 4q26 | |
| SNHG16 | small nucleolar RNA host gene 16 | ncRAN, Nbla12061, Nbla10727 | 17q25.1 | |
| SNHG18 | small nucleolar RNA host gene 18 | 5p15.31 | ||
| SOX1-OT | SOX1 overlapping transcript | LINC00403 | 13q34 | |
| SOX2-OT | SOX2 overlapping transcript | SOX2OT | DKFZp761J1324, NCRNA00043 | 3q26.33 |
| SOX21-AS1 | SOX21 antisense RNA 1 (head to head) | 13q32.1 | ||
| SPRY4-IT1 | SPRY4 intronic transcript 1 | SPRIGHTLY | 5q31.3 | |
| TARID | TCF21 antisense RNA inducing promoter demethylation | EYA4-AS1 | 6q23.2 | |
| TDRG1 | testis development related 1 (non-protein coding) | LINC00532, lincRNA-NR_024015 | 6p21.2 | |
| THRIL | TNF and HNRNPL related immunoregulatory long non-coding RNA | Linc1992, TCONS_00020260, BRI3BP-AS1 | 12q24.31 | |
| TH2LCRR | T helper type 2 locus control region associated RNA | TH2-LCR | 5q31.1 | |
| TINCR | tissue differentiation-inducing non-protein coding RNA | PLAC2 | FLJ90734, NCRNA00036, LINC00036, onco-lncRNA-16 | 19p13.3 |
| TMEM161B-AS1 | TMEM161B antisense RNA 1 | linc-POLR3G-8 | 5q14.3 | |
| TP53COR1 | tumor protein p53 pathway corepressor 1 (non-protein coding) | linc-p21, lincRNA-p21, Trp53cor1 | 6p21.2 | |
| TP53TG1 | TP53 target 1 (non-protein coding) | TP53AP1 | H_RG012D21.9, LINC00096 | 7q21.12 |
| TP73-AS1 | TP73 antisense RNA 1 | KIAA0495 | PDAM | 1p36.32 |
| TRERNA1 | translation regulatory long non-coding RNA 1 | LINC00651 | ncRNA-a7, treRNA | 20q13.13 |
| TSIX | TSIX transcript, XIST antisense RNA | NCRNA00013, XIST-AS1, LINC00013 | Xq13.2 | |
| TUG1 | taurine up-regulated 1 (non-protein coding) | FLJ20618, NCRNA00080, LINC00080 | 22q12.2 | |
| TUNAR | TCL1 upstream neural differentiation-associated RNA | LINC00617 | TUNA, HI-LNC78 | 14q32.2 |
| TUSC7 | tumor suppressor candidate 7 (non-protein coding) | NCRNA00295, LSAMP-AS3 | LINC00902, LOC285194 | 3q13.31 |
| TUSC8 | tumor suppressor candidate 8 (non-protein coding) | LINC01071 | XLOC_010588 | 13q14.11 |
| UCA1 | urothelial cancer associated 1 (non-protein coding) | LINC00178, CUDR, UCAT1, onco-lncRNA-36 | 19p13.12 | |
| VLDLR-AS1 | VLDLR antisense RNA 1 | lincRNA-VLDLR | 9p24.2 | |
| VPS9D1-AS1 | VPS9D1 antisense RNA 1 | MYU | 16q24.3 | |
| WSPAR | WNT signaling pathway activating non-coding RNA | TCONS_00009511-XLOC_004555, lncTCF7 | 5q31.1 | |
| WT1-AS | WT1 antisense RNA | WIT1 | WIT-1, WT1AS, WT1-AS1 | 11p13 |
| WWOX-AS1 | WWOX antisense RNA 1 | RP11-190D6.2 | 16q23.1 | |
| XACT | X active specific transcript (non-protein coding) | Xq23 | ||
| XIST | X inactive specific transcript (non-protein coding) | DXS399E | NCRNA00001, DXS1089, swd66, LINC00001 | Xq13.2 |
| YAM1 | YY1-associated myogenesis RNA 1 | Yam-1 | 16p11.2 | |
| ZEB1-AS1 | ZEB1 antisense RNA 1 | 10p11.22 | ||
| ZEB2-AS1 | ZEB2 antisense RNA 1 | ZEB2AS, ZEB2-AS | ZEB2NAT | 2q22.3 |
| ZFAS1 | ZNFX1 antisense RNA 1 | C20orf199, NCRNA00275, ZNFX1-AS1 | HSUP1, HSUP2 | 20q13.13 |
This page lists long non-coding RNA genes that encode a transcript with published evidence. Links to the relevant publications can be accessed from the Symbol Report for each gene.
Note that Transcribed pseudogenes with a published function are listed separately.
All genes with the locus type "RNA, long non-coding" can be downloaded from our Statistics and Downloads page.
