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Gene Family: Long non-coding RNAs (published)

Also known as : "lncRNAs", "long ncRNAs", "Long non coding RNAs"
A subset of : Non-coding RNAs

Long non-coding RNA: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides (Perkel 2013). [Source: Wikipedia]

Genes contained within the family: 196

Approved Symbol Approved Name Previous Symbols Synonyms Chromosome
AATBC apoptosis associated transcript in bladder cancer 21q22.3
ABALON apoptotic BCL2L1-antisense long non-coding RNA INXS 20q11.21
AIRN antisense of IGF2R non-protein coding RNA AIR, NCRNA00088, IGF2RAS, IGF2R-AS1 6q25.3
APOA1-AS APOA1 antisense RNA 11q23.3
APTR Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) RSBN1L-AS1 7q11.23
ATXN8OS ATXN8 opposite strand (non-protein coding) SCA8, KLHL1AS NCRNA00003 13q21
BACE1-AS BACE1 antisense RNA BACE1AS FJ573250, NCRNA00177, BACE1-AS1 11q23.3
BANCR BRAF-activated non-protein coding RNA LINC00586 9q21.11
BCYRN1 brain cytoplasmic RNA 1 BC200, BC200a, NCRNA00004, LINC00004 2p16
BDNF-AS BDNF antisense RNA BDNFOS BT2A, BT2B, BT2C, BT2D, NCRNA00049, BDNF-AS1 11p14.1
BGLT3 beta globin locus transcript 3 (non-protein coding) LINC01083, BGL3, lncRNA-BGL3 11p15.4
BIRC6-AS2 BIRC6 antisense RNA 2 megamind 2p22.3
BISPR BST2 interferon stimulated positive regulator (non-protein coding) 19p13.11
BLACAT1 bladder cancer associated transcript 1 (non-protein coding) linc-UBC1, LINC00912, onco-lncRNA-30 1q32.1
BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) NCRNA00187 3q23
CAHM colon adenocarcinoma hypermethylated (non-protein coding) LINC00468 6q26
CASC8 cancer susceptibility candidate 8 (non-protein coding) LINC00860, CARLo-1 8q24.21
CASC11 cancer susceptibility candidate 11 (non-protein coding) TCONS_00014535, LINC00990, CARLo-7 8q24.21
CASC15 cancer susceptibility candidate 15 (non-protein coding) LINC00340 6p22.3
CASC19 cancer susceptibility candidate 19 (non-protein coding) LINC01245 CARLo-6 8q24.21
CASC21 cancer susceptibility candidate 21 (non-protein coding) LINC01244 CARLo-2 8q24.21
CASC22 cancer susceptibility candidate 22 (non-protein coding) LINC01373 TCONS_00024290, LincRNA-ENST00000515084 16q12.1
CCAT1 colon cancer associated transcript 1 (non-protein coding) CARLo-5, onco-lncRNA-40 8q24.21
CCAT2 colon cancer associated transcript 2 (non-protein coding) NCCP1, LINC00873 8q24.21
CDKN2B-AS1 CDKN2B antisense RNA 1 ANRIL, CDKN2BAS, RP11-145E5.4, NCRNA00089, p15AS, CDKN2B-AS, PCAT12 9p21.3
CDR1-AS CDR1 antisense RNA CDR1NAT, ciRS-7, CDR1as Xq27.1
CISTR chondrogenesis-associated transcript CISTR-ACT, CISTRACT, re52431 12q13.13
CRNDE colorectal neoplasia differentially expressed (non-protein coding) LOC643911, LINC00180, CRNDEP 16q12.2
CTBP1-AS CTBP1 antisense RNA PCAT10 4p16.3
CYP4A22-AS1 CYP4A22 antisense RNA 1 ncRNA-a3 1p33
CYYR1-AS1 cysteine/tyrosine-rich 1 antisense RNA 1 21q21.3
DALIR DNMT1-associated long intergenic non-coding RNA DALI 2q12
DANCR differentiation antagonizing non-protein coding RNA KIAA0114, SNHG13 ANCR, AGU2, lncRNA-ANCR 4q12
DANT1 DXZ4 associated non-coding transcript 1, proximal Xq23
DANT2 DXZ4 associated non-coding transcript 2, distal Xq23
DBET D4Z4 binding element transcript (non-protein coding) DBE-T, DUX4L30 4q35.2
DHRS4-AS1 DHRS4 antisense RNA 1 C14orf167 PRO1488, AS1DHRS4 14q11.2
DIO3OS DIO3 opposite strand/antisense RNA (head to head) C14orf134 NCRNA00041, DIO3-AS1 14q32.31
DISC2 disrupted in schizophrenia 2 (non-protein coding) DISC1-AS1, DISC1OS, NCRNA00015 1q42.1
DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) DLB1, BCMS LEU1, XTP6, NCRNA00021, LINC00021, BCMS1 13q14.3
DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) DLB2, BCMSUN, RFP2OS LEU2, TRIM13OS, NCRNA00022, LINC00022, MIR15AHG 13q14
DLG2-AS1 DLG2 antisense RNA 1 DLG2AS, DLG2-AS PSZA11q14, SZ-1 11q14.1
DLX6-AS1 DLX6 antisense RNA 1 NCRNA00212 FLJ34048, Evf-2 7q21.3
DRAIC downregulated RNA in cancer, inhibitor of cell invasion and migration 15q23
EGOT eosinophil granule ontogeny transcript (non-protein coding) EGO, NCRNA00190 3p26.1
EMX2OS EMX2 opposite strand/antisense RNA NCRNA00045, EMX2-AS1 10q26.11
ERICD E2F1-regulated inhibitor of cell death (non-protein coding) LINC01130 TCONS_00014875, ERIC 8q24.3
ESRG embryonic stem cell related (non-protein coding) HESRG 3p14.3
FALEC focally amplified long non-coding RNA in epithelial cancer LINC00568 ncRNA-a1, FAL1 1q21.3
FAS-AS1 FAS antisense RNA 1 FASAS, FAS-AS SAF 10q24.1
FENDRR FOXF1 adjacent non-coding developmental regulatory RNA FOXF1-AS1 lincFOXF1, onco-lncRNA-21 16q24.1
FIRRE firre intergenic repeating RNA element LINC01200 Xq26.2
FOXCUT FOXC1 upstream transcript (non-protein coding) LINC01379 TCONS_00011636 6p25.3
FTX FTX transcript, XIST regulator (non-protein coding) NCRNA00182, MIR374AHG LINC00182, FLJ33139 Xq13.2
GACAT1 gastric cancer associated transcript 1 (non-protein coding) LINC00876, AC096655.1-002 2q12.3
GACAT2 gastric cancer associated transcript 2 (non-protein coding) MTCL1-AS1 HMlincRNA717 18p11.22
GACAT3 gastric cancer associated transcript 3 (non-protein coding) LINC01458 lncRNA-AC130710 2p24.3
GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA LINC01540 TCONS_00026238 18p11.31
GAS5 growth arrest-specific 5 (non-protein coding) SNHG2, NCRNA00030 1q25.1
GHET1 gastric carcinoma proliferation enhancing transcript 1 lncRNA-GHET1 7q36.1
GHRLOS ghrelin opposite strand/antisense RNA NCRNA00068, GHRL-AS1 3p25.3
GNAS-AS1 GNAS antisense RNA 1 GNASAS, GNAS-AS SANG, NESP-AS, NESPAS, GNAS1AS, NCRNA00075 20q13.32
GPR1-AS GPR1 antisense RNA GPR1-AS1 GPR1AS 2q33.3
HAGLR HOXD antisense growth-associated long non-coding RNA HOXD-AS1 Mdgt 2q31.1
HAR1A highly accelerated region 1A (non-protein coding) HAR1F, NCRNA00064, LINC00064 20q13.33
HAR1B highly accelerated region 1B (non-protein coding) HAR1R, NCRNA00065, LINC00065 20q13.33
HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA LINC-HEIH, lncRNA-HEIH, LINC00848, HCCAT2 5q35.3
HIF1A-AS1 HIF1A antisense RNA 1 5'aHIF-1A 14q23.2
HOTAIR HOX transcript antisense RNA HOXC-AS4, HOXC11-AS1, NCRNA00072 12q13.13
HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 HOXA-AS1, NCRNA00179, HOXA1-AS1 7p15.2
HOTTIP HOXA distal transcript antisense RNA NCRNA00213 HOXA-AS6, RP1-170O19.3, HOXA13-AS1 7p15.2
HOXA-AS2 HOXA cluster antisense RNA 2 HOXA3as 7p15.2
HOXA-AS3 HOXA cluster antisense RNA 3 HOXA6as 7p15.2
HOXA11-AS HOXA11 antisense RNA HOXA11AS HOXA11-AS1, HOXA11S, HOXA-AS5, NCRNA00076 7p15.2
HULC hepatocellular carcinoma up-regulated long non-coding RNA NCRNA00078, LINC00078, HCCAT1 6p24.3
H19 H19, imprinted maternally expressed transcript (non-protein coding) D11S813E, ASM, ASM1, NCRNA00008, LINC00008 11p15.5
IFNG-AS1 IFNG antisense RNA 1 Tmevpg1, LincR-Ifng-3'AS, NEST 12q15
IGF2-AS IGF2 antisense RNA IGF2AS PEG8, IGF2-AS1 11p15.5
IPW imprinted in Prader-Willi syndrome (non-protein coding) NCRNA00002 15q11.2
JADRR JADE1 adjacent regulatory RNA LINC00915 lncRNA-JADE 4q28.2
JPX JPX transcript, XIST activator (non-protein coding) NCRNA00183 ENOX, LINC00183, DCBALD06 Xq13.2
KANTR KDM5C adjacent non-coding transcript LINC01155 Spasm Xp11.22
KCNIP4-IT1 KCNIP4 intronic transcript 1 NCRNA00099 UM9-5 4p15.31
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) KvDMR1, KCNQ1-AS2, KvLQT1-AS, LIT1, NCRNA00012 11p15.5
LCAL1 lung cancer associated lncRNA 1 onco-lncRNA-27 6q14.1
LINCMD1 long intergenic non-protein coding RNA, muscle differentiation 1 MIR133BHG, LINC-MD1 6p12.2
LINC-PINT long intergenic non-protein coding RNA, p53 induced transcript MKLN1-AS1 FLJ43663, PINT, LincRNA-Pint 7q32.3
LINC-ROR long intergenic non-protein coding RNA, regulator of reprogramming lincRNA-RoR, lincRNA-ST8SIA3, ROR 18q21.31
LINC00162 long intergenic non-protein coding RNA 162 C21orf113, NCRNA00162 PRED74, NLC1-C 21q22.3
LINC00163 long intergenic non-protein coding RNA 163 C21orf134, NCRNA00163 NLC1-A, NLC1A 21q22.3
LINC00165 long intergenic non-protein coding RNA 165 C21orf135, NCRNA00165 NLC1-B 21q22.3
LINC00312 long intergenic non-protein coding RNA 312 LOH3CR2A, NCRNA00312 NAG7, NAG-7, ERR10, ERR-10, LMCD1DN 3p25.3
LINC00570 long intergenic non-protein coding RNA 570 ncRNA-a5 2p25.1
LINC00581 long intergenic non-protein coding RNA 581 6p22.3
LINC00599 long intergenic non-protein coding RNA 599 Rncr3 8p23.1
LINC00850 long intergenic non-protein coding RNA 850 KUCG1 Xq28
LINC00853 long intergenic non-protein coding RNA 853 PDZK1IP1-AS1 ncRNA-a4 1p33
LINC01080 long intergenic non-protein coding RNA 1080 TCONS_00021856 13q31.1
LINC01133 long intergenic non-protein coding RNA 1133 1q23.2
LINC01157 long intergenic non-protein coding RNA 1157 TCONS_00010378, linc-Enc1 5q13.3
LINC01191 long intergenic non-protein coding RNA 1191 VIN, lnc-ACTR3 2q14.1
LRP1-AS LRP1 antisense RNA 12q13.3
LSINCT5 long stress-induced non-coding transcript 5 5p15.33
LUCAT1 lung cancer associated transcript 1 (non-protein coding) SCAL1 5q14.3
LUNAR1 leukemia-associated non-coding IGF1R activator RNA 1 15q26.3
MAFTRR MAF transcriptional regulator RNA linc-MAF-4 16q23.2
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) PRO1073, MALAT-1, NCRNA00047, HCN, NEAT2, LINC00047, mascRNA 11q13.1
MEG3 maternally expressed 3 (non-protein coding) GTL2, NCRNA00023, LINC00023, onco-lncRNA-83 14q32.2
MEG8 maternally expressed 8 (non-protein coding) NCRNA00024, Irm, Rian, Bsr, LINC00024 14q32.31
MEG9 maternally expressed 9 (non-protein coding) LINC00584 14q32.31
MHRT myosin heavy chain-associated RNA transcript Myheart 14q11.2
MIAT myocardial infarction associated transcript (non-protein coding) C22orf35 FLJ25967, Rncr2, gomafu, NCRNA00066, LINC00066, lncRNA-MIAT 22q12.1
MIR17HG miR-17-92 cluster host gene C13orf25, MIRHG1 FLJ14178, MIRH1, MIHG1, NCRNA00048, miR-17-92, LINC00048 13q31.3
MIR22HG MIR22 host gene C17orf91 MGC14376, DKFZp686O06159 17p13.3
MIR31HG MIR31 host gene LOC554202 9p21.3
MIR99AHG mir-99a-let-7c cluster host gene C21orf35, FLJ38295, C21orf34, LINC00478 MONC 21q11-q21.1
MIR100HG mir-100-let-7a-2 cluster host gene AGD1, lncRNA-N2 11q24.1
MIR155HG MIR155 host gene MIRHG2 BIC, NCRNA00172 21q21.3
MIR222HG MIR222 host gene Lnc-Ang362 Xp11.3
MIR503HG MIR503 host gene MGC16121, H19X Xq26.3
MIR600HG MIR600 host gene C9orf45, NCRNA00287 GL012, FLJ22161 9q34.11
MYCNOS MYCN opposite strand NCYM, N-CYM, MYCN-AS1 2p24.1
MYCNUT MYCN upstream transcript (non-protein coding) MYCNUN lncUSMycN 2p24.3
NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest 9q22.33
NBAT1 neuroblastoma associated transcript 1 CASC14 NBAT-1 6p22.3
NCRUPAR non-protein coding RNA, upstream of F2R/PAR1 ncR-uPAR, ncRuPAR, NCRNA00193 5q13.3
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) NCRNA00084 TncRNA, MENepsilon/beta, LINC00084, VINC 11q13.1
NKILA NF-kappaB interacting long non-coding RNA 20q13.31
NRAV negative regulator of antiviral response (non-protein coding) DYNLL1-AS1 12q24.31
NRIR negative regulator of interferon response (non-protein coding) lncRNA-CMPK2 2p25.2
NRON non-protein coding RNA, repressor of NFAT NCRNA00194 9q33.3
OIP5-AS1 OIP5 antisense RNA 1 cyrano 15q15.1
OLMALINC oligodendrocyte maturation-associated long intergenic non-coding RNA C10orf75, NCRNA00263, LINC00263 bA34D15.5, FLJ12974, HI-LNC80 10q24.31
OTX2-AS1 OTX2 antisense RNA 1 (head to head) OTX2OS1 14q22.3
OVAAL ovarian adenocarcinoma amplified long non-coding RNA LINC01131, OVAL 1q25.3
PACERR PTGS2 antisense NFKB1 complex-mediated expression regulator RNA PACER, PTGS2-AS1 1q31.1
PANDAR promoter of CDKN1A antisense DNA damage activated RNA PANDA 6p21.2
PARTICL promoter of MAT2A antisense radiation-induced circulating long non-coding RNA PARTICLE 2p11.2
PART1 prostate androgen-regulated transcript 1 (non-protein coding) DKFZP586D0823, NCRNA00206 5q12.1
PAUPAR PAX6 upstream antisense RNA 11p13
PCAT1 prostate cancer associated transcript 1 (non-protein coding) PCAT-1, PCA1 8q24.21
PCAT4 prostate cancer associated transcript 4 (non-protein coding) GDEP, PCAN1, PCA4 4q21.21
PCAT6 prostate cancer associated transcript 6 (non-protein coding) KDM5B-AS1 ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96 1q32.1
PCAT7 prostate cancer associated transcript 7 (non-protein coding) PCAN-R2 9q22.32
PCAT14 prostate cancer associated transcript 14 (non-protein coding) 22q11.23
PCAT18 prostate cancer associated transcript 18 (non-protein coding) LINC01092 18q11.2
PCAT29 prostate cancer associated transcript 29 (non-protein coding) 15q23
PCA3 prostate cancer associated 3 (non-protein coding) DD3, NCRNA00019, PCAT3 9q21.2
PCGEM1 PCGEM1, prostate-specific transcript (non-protein coding) NCRNA00071, LINC00071, PCAT9 2q32.3
PEG13 paternally expressed 13 8q24.3
PRINS psoriasis associated non-protein coding RNA induced by stress NCRNA00074 10p12.1
PRNCR1 prostate cancer associated non-coding RNA 1 PCAT8 8q24.21
PTCSC1 papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) PTCSC AK023948, NCRNA00197 8q24
PTCSC2 papillary thyroid carcinoma susceptibility candidate 2 (non-protein coding) 9q22.33
PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) 14q13.3
PTENP1-AS PTENP1 antisense RNA PTENpg1-asRNA 9p13.3
PVT1 Pvt1 oncogene (non-protein coding) NCRNA00079, LINC00079, onco-lncRNA-100 8q24
PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor PAR-SN, PARSN 15q11.2
PWAR1 Prader Willi/Angelman region RNA 1 PAR1, PAR-1 15q11.2
PWAR5 Prader Willi/Angelman region RNA 5 PAR5, PAR-5 15q11.2
PWRN1 Prader-Willi region non-protein coding RNA 1 NCRNA00198 15q11.2
PWRN2 Prader-Willi region non-protein coding RNA 2 NCRNA00199 15q11.2
RASSF1-AS1 RASSF1 antisense RNA 1 ANRASSF1 3p21.3
RGMB-AS1 RGMB antisense RNA 1 5q15
RPS6KA2-AS1 RPS6KA2 antisense RNA 1 6q27
SCAANT1 SCA7/ATXN7 antisense RNA 1 ATXN7-AS1 3p14.1
SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) LINC00913 SChLAP1, PCAT11 2q31.3
SENCR smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA FLI1-AS1 11q24.3
SNHG1 small nucleolar RNA host gene 1 UHG, NCRNA00057, LINC00057 11q12.3
SNHG3 small nucleolar RNA host gene 3 RNU17D, RNU17C U17HG, U17HG-A, NCRNA00014 1p35.3
SNHG4 small nucleolar RNA host gene 4 U19H, NCRNA00059 5q31.2
SNHG5 small nucleolar RNA host gene 5 C6orf160 MGC16362, bA33E24.2, U50HG, NCRNA00044, LINC00044 6q14.3
SNHG6 small nucleolar RNA host gene 6 U87HG, HBII-276HG, NCRNA00058 8q13
SNHG16 small nucleolar RNA host gene 16 ncRAN 17q25.1
SOX2-OT SOX2 overlapping transcript SOX2OT DKFZp761J1324, NCRNA00043 3q26.33
SPRY4-IT1 SPRY4 intronic transcript 1 5q31.3
TARID TCF21 antisense RNA inducing promoter demethylation EYA4-AS1 6q23.2
TDRG1 testis development related 1 (non-protein coding) LINC00532, lincRNA-NR_024015 6p21.2
THRIL TNF and HNRNPL related immunoregulatory long non-coding RNA Linc1992, TCONS_00020260, BRI3BP-AS1 12q24.31
TH2LCRR T helper type 2 locus control region associated RNA TH2-LCR 5q31.1
TINCR tissue differentiation-inducing non-protein coding RNA PLAC2 FLJ90734, NCRNA00036, LINC00036, onco-lncRNA-16 19p13.3
TMEM161B-AS1 TMEM161B antisense RNA 1 linc-POLR3G-8 5q14.3
TP53COR1 tumor protein p53 pathway corepressor 1 (non-protein coding) linc-p21, lincRNA-p21, Trp53cor1 6p21.2
TP53TG1 TP53 target 1 (non-protein coding) TP53AP1 H_RG012D21.9, LINC00096 7q21.1
TRERNA1 translation regulatory long non-coding RNA 1 LINC00651 ncRNA-a7, treRNA 20q13.13
TSIX TSIX transcript, XIST antisense RNA NCRNA00013, XIST-AS1, LINC00013 Xq13.2
TUG1 taurine up-regulated 1 (non-protein coding) FLJ20618, NCRNA00080, LINC00080 22q12.2
TUNAR TCL1 upstream neural differentiation-associated RNA LINC00617 TUNA, HI-LNC78 14q32.2
TUSC7 tumor suppressor candidate 7 (non-protein coding) NCRNA00295, LSAMP-AS3 LINC00902, LOC285194 3q13.31
TUSC8 tumor suppressor candidate 8 (non-protein coding) LINC01071 XLOC_010588 13q14.11
UCA1 urothelial cancer associated 1 (non-protein coding) LINC00178, CUDR, UCAT1, onco-lncRNA-36 19p13.12
WT1-AS WT1 antisense RNA WIT1 WIT-1, WT1AS, WT1-AS1 11p13
XIST X inactive specific transcript (non-protein coding) DXS399E NCRNA00001, DXS1089, swd66, LINC00001 Xq13.2
YAM1 YY1-associated myogenesis RNA 1 Yam-1 16p11.2
ZEB2-AS1 ZEB2 antisense RNA 1 ZEB2AS, ZEB2-AS ZEB2NAT 2q22.3
ZFAS1 ZNFX1 antisense RNA 1 C20orf199, NCRNA00275, ZNFX1-AS1 HSUP1, HSUP2 20q13.13

Comments

This page lists long non-coding RNA genes that encode a transcript with published evidence. Links to the relevant publications can be accessed from the Symbol Report for each gene. Note that functional pseudogenes are listed separately. All genes with the locus type "RNA, long non-coding" can be downloaded from our Statistics and Downloads page.

External resources