Virtual Gene Nomenclature Workshop
Chromosome X

There were 85 genes without sequence on this chromosome, there are now 28.

Many thanks to Grant Sutherland (Women's and Children's Hospital, Australia) and Youla Karavidopoulou (European Bioinformatics Institute) for their help with this workshop.

Please email the Nomenclature Editor Ruth Lovering for further information, or to offer your help with these genes.
 

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The following 28 loci have no sequence available, some of these have been given an alternative classification

Approved Symbol

Gene Name

Chromosomal Location

PubMed ID

Entrez Gene ID

Locus Type

Date Approved

ACTBP1

actin, beta pseudogene 1

Xq13-q22

3837182

61

pseudogene

ARSC2

arylsulfatase C, isozyme F

X

413

gene

31/08/1988

BDM

behavior disorder modifier

X

625

gene

C1HR

C1AGOH temperature sensitivity complementing

X

709

gene

CHR39C

cholesterol-repressible protein 39C

Xq13-q21

1127

gene 

01/01/1986

CYB5P1

cytochrome b-5 pseudogene 1

X

1840560

1529

pseudogene

22/06/1990

EEF1AL13

eukaryotic translation elongation factor 1 alpha-like 13

Xq21.2-q21.32

8812466

1931

unknown

15/08/1995

FCP1

F-cell production 1

Xp22.3-p22.2

2461753

2221

phenotype only

14/12/1994

FDPSL5

farnesyl diphosphate synthase-like 5 (farnesyl pyrophosphate synthetase-like 5)

Xq21-q22

2613235

2229

gene 

25/09/1989

FRAXA

fragile site, folic acid type, rare, fra(X)(q27.3), (macroorchidism, mental retardation)

Xq27.3

2477

region

 01/01/1986

FRAXB

fragile site, aphidicolin type, common, fra(X)(p22.31)

Xp22.31

2478

region

FRAXC

fragile site, aphidicolin type, common, fra(X)(q22.1)

Xq22.1

2479

region

FRAXD

fragile site, aphidicolin type, common, fra(X)(q27.2)

Xq27.2

2480

region

FRAXE

fragile site, folic acid type, rare, fra(X)(q28)

Xq28

 1605195

2481

region

 24/08/1992

MAA

microphthalmia or anophthalmia and associated anomalies

X

4080

phenotype only

MF4

metacarpal 4-5 fusion

X

4235

phenotype only 

OATL2

ornithine aminotransferase-like 2

Xp11.22-p11.21

4944

gene 

03/06/1991

ODT1

oligodontia 1

X

4960

phenotype only 

10/09/1990

S11

surface antigen (X-linked) 2

Xq26-q28

6267

gene  

S12

surface antigen (X-linked) 3

X

6268

gene  

TDD

testicular 17,20-desmolase deficiency

X

6994

phenotype only 

TKCR

torticollis, keloids, cryptorchidism and renal dysplasia

Xq28-qter

6132873

7085

phenotype only  

TSIX

X (inactive)-specific transcript, antisense

Xq13.2

10192391

9383

gene  

28/09/1999

XGR

expression of XG and MIC2 on erythrocytes

Xp22.32;Yp11

7501

phenotype only  

XIC

X chromosome inactivation center

Xq12-q13

6198418

7502

region

02/06/1989

XLRL

X-linked lymphocyte-regulated-like 1 (mouse)

X

8535073

7505

Non-human ortholog 

03/11/1995

XM

Xm(a) antigen

X

7506

gene  

XS

X-linked suppressor of LU antigens

Xp21.2-q21.1

7523

gene   

 

 

The following 48 genes now have sequence data associated.

Approved Symbol

Gene Name

Chromosomal Location

PubMed ID

Entrez Gene ID

Locus Type

Date Approved

ACTL1

actin-like 1

Xp11-q11

83

pseudogene

01/01/1986

API5L1

API5-like 1

Xq24

10373420

pseudogene

14/07/1999

AMDP1

S-adenosylmethionine decarboxylase pseudogene 1

Xq22-q28

7789170

263

pseudogene

31/08/1988

ASSP4

argininosuccinate synthetase pseudogene 4

Xpter-p22

6093508

449

pseudogene

ASSP5

argininosuccinate synthetase pseudogene 5

Xq22-q26

6093508

450

pseudogene

ATF4P

activating transcription factor 4 pseudogene (tax-responsive enhancer element B67 pseudogene)

Xq28

8088803

469

pseudogene

31/01/1994

CALM1P1

calmodulin 1 (phosphorylase kinase, delta) pseudogene 1

reserved

7925473

802

pseudogene

02/11/1995

CAPZA1P

capping protein (actin filament) muscle Z-line, alpha 1 pseudogene

Xq21.2-Xq22.3

53338

pseudogene

02/05/2000

EEF1B4

eukaryotic translation elongation factor 1 beta 4

X

8250921

1935

gene

13/11/1995

ETF1P3

eukaryotic translation termination factor 1 pseudogene 3

X

1546371

6826

pseudogene

12/08/1999

FRAXF

fragile site, folic acid type, rare, fra(X)(q28)

Xq28

8499907

2482

region

14/04/1994

FTHL8

ferritin, heavy polypeptide-like 8

Xq26-q28

3862645

2501

FTLL2

ferritin, light polypeptide-like 2

Xp22.3-p21.2

2514

pseudogene

GAPDL10

glyceraldehyde-3-phosphate dehydrogenase-like 10

Xpter-q13

2607

pseudogene

31/08/1988

GAPDL12

glyceraldehyde-3-phosphate dehydrogenase-like 12

Xq13-qter

2609

.

.

GAPDL2

glyceraldehyde-3-phosphate dehydrogenase-like 2

Xpter-q13

2599

pseudogene

GAPDP1

glyceraldehyde-3-phosphate dehydrogenase pseudogene 1

Xp11.4-p11.23

2616

pseudogene

GKP6

glycerol kinase pseudogene 6

Xq

7987308

2716

pseudogene

14/12/1994

GLUDP1

glutamate dehydrogenase pseudogene 1

Xq24-q25

2747

pseudogene

01/01/1986

GPXP1

glutathione peroxidase pseudogene 1

X

2883

pseudogene

25/07/1988

HNRPDP

heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene

Xq12

8661052

8251

pseudogene

04/02/1999

HRASP

v-Ha-ras Harvey rat sarcoma viral oncogene homolog pseudogene

Xpter-q26

3266

pseudogene

HSPAP1

heat shock 70kDa protein pseudogene 1

X

3314

pseudogene

HSPBL3

heat shock 27kDa protein-like 3

Xpter-q22

2538929

3319

23/05/1989

IDSP1

iduronate 2-sulfatase pseudogene 1

Xq27.3-q28

7814022

3424

pseudogene

11/07/1995

INE2

inactivation escape 2

Xp22.2

9244435

8551

gene

07/07/1999

LAMRL4

laminin receptor-like 4

Xcen-q21

1649122

3924

pseudogene

09/11/1990

LDHBP

lactate dehydrogenase B pseudogene

X

3947

pseudogene

10/05/1989

LHFPL1

lipoma HMGIC fusion partner-like 1

Xq23

10329012

10185

02/06/1999

L1CAM

L1 cell adhesion molecule (hydrocephalus, stenosis of aqueduct of Sylvius 1, MASA (mental retardation, aphasia, shuffling gait and adducted thumbs) syndrome, spastic paraplegia 1) (previous symbol MIC5)

Xq27-q28

4268

gene

NXF4

nuclear RNA export factor 4

Xq22

55999

31/07/2000

OATL1

ornithine aminotransferase-like 1

Xp11.3-p11.23

4943

gene

06/06/1991

PCNAP

proliferating cell nuclear antigen pseudogene

Xpter-q13

5113

pseudogene

15/01/1990

PRKXP2

protein kinase, X-linked, pseudogene 2

Xq12-Xq13

5615

pseudogene

16/01/1997

RDXP2

radixin pseudogene 2

Xp21.3

5964

pseudogene

08/12/1992

RM2P3

ribonucleotide reductase M2 polypeptide pseudogene 3

Xp21-p11

6245

pseudogene

RPGR

retinitis pigmentosa GTPase regulator (previous symbol RP15)

Xp22.13-p22.1

7611300

6110

gene

01/06/1995

RRM2P4

ribonucleotide reductase M2 polypeptide pseudogene 4

Xq

3311968

6246

pseudogene

01/01/198

SC4MOP

sterol-C4-methyl oxidase pseudogene

Xp21.1

6308

pseudogene

10/11/1997

SHC1P1

SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 1

Xq12-Xq13.1

6465

pseudogene

09/05/1997

SLC25A6

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6

Xp22.32

293

03/08/1990

SRD5AP1

steroid-5-alpha-reductase, alpha polypeptide pseudogene 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha pseudogene)

Xq24-qter

1686016

6719

pseudogene

15/05/1991

SYP

synaptophysin

Xp11.23-p11.22

6855

15/01/1990

TMSL7

thymosin-like 7

X

2004759

7121

18/06/1990

XG

Xg blood group (pseudoautosomal boundary-divided on the X chromosome)

Xp22.32

8054981

7499

XIST

X (inactive)-specific transcript

Xq13.2

1985261

7503

04/02/1991

ZXDA

zinc finger, X-linked, duplicated A

X

8268913

7789

02/11/1993

ZXDB

zinc finger, X-linked, duplicated B

X

8268913

7790

29/08/1994

The following 9 gene symbols have been withdrawn

Approved Symbol

Gene Name

Chromosomal Location

PubMed ID

Entrez Gene ID

Locus Type

Date Approved

CXorf3

chromosome X open reading frame 3

Xq24-q25

9771704

10177

02/06/1999

F2L

coagulation factor II (thrombin)-like

Xpter-q25

2148

.

.

PSF1

protein spot in 2-D gels 24kDa

Xq12-q28

5665

.

.

PSF2

protein spot in 2-D gels 27kDa

Xpter-q13

5666

.

.

PSF3

protein spot in 2-D gels 37kDa

Xpter-q13

5667

.

.

PSF4

protein spot in 2-D gels 40kDa

Xpter-q13

5668

.

.

PYHG12

protein spot in 2-D gels 55kDa

X

5848

.

.

PYHG17

protein spot in 2-D gels 32kDa

X

5852

.

.

PYHG4

protein spot in 2-D gels 104kDa

X

5841

.

.


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Maintained by hgnc@genenames.org Last updated: October 2003