Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Science Careers Forum

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Account Information

University College London   Alerts  |  Access Rights  |  My Account  |  Sign In


Science 7 December 2001:
Vol. 294. no. 5549, pp. 2095 - 2096
DOI: 10.1126/science.294.5549.2095

Letters

Nomenclature for Ion Channel Subunits

Cyclic nucleotide-gated (activated) ion channels are most well known for mediating visual and olfactory signal transductions, but they are also expressed in other cell types and tissues. In native tissues, these channels are heteromultimers, with different heteromers showing distinct nucleotide sensitivity, ion conductance (selectivity), and Ca2+ modulation.

Molecular cloning and genome sequencing efforts have revealed the presence of six genes coding for subunits of cyclic nucleotide-gated channels in human and mouse. The initial isolation and functional characterization of these subunits by different laboratories have led to a confusing and occasionally contradictory nomenclature for describing members of this gene family. To make future work on these channels more easily understood, a group of us engaged in the study of these channels have agreed to adopt a common nomenclature.

The adopted nomenclature (see the table) for these channel subunits recognizes two phylogenetically distinct subfamilies, CNGA and CNGB, defined by their sequence relationships illustrated in the figure. The members in each subfamily are now numbered to retain as much similarity as possible to previous identifiers. However, notably, the OCNC2/CNGB2/CNG5 subunit is now identified as CNGA4, to convey the phylogenetic relationship between this gene and others of the CNGA subfamily. In the CNGB subfamily, the member expressed in rod photoreceptors, olfactory neurons and other tissues is designated CNGB1, whereas that found in cone photoreceptors and possibly other tissues is CNGB3. In our current nomenclature, the CNGB2 designation is no longer used.

This nomenclature is used in two reports in this issue and will be adopted in future publications by the undersigned investigators.


ADOPTED NOMENCLATURE FOR CYCLIC NUCLEOTIDE-GATED ION CHANNEL SUBUNITS
Adopted nomenclaturePrevious designations
CNGA1CNG1/CNGa1/RCNC1
CNGA2CNG2/CNGa3/OCNC1
CNGA3CNG3/CNGa2/CCNC1
CNGA4CNG5/CNGa4/OCNC2/CNGB2
CNGB1CNG4/CNGb1/RCNC2
CNGB3CNG6/CNGb2/CCNC2

Jonathan Bradley,*
Howard Hughes Medical Institute (HHMI),
Department of Neuroscience,
Johns Hopkins University School of Medicine,
Baltimore, MD 21205, USA.

Stephan Frings,
Forschungszentrum Jülich,
Leo-Brandt-Strasse,
Jülich, 52425, Germany.

King-Wai Yau,
Howard Hughes Medical Institute (HHMI),
Department of Neuroscience,
Johns Hopkins University School of Medicine,
Baltimore, MD 21205, USA.

Randall Reed
Howard Hughes Medical Institute (HHMI),
Department of Neuroscience,
Johns Hopkins University School of Medicine,
Baltimore, MD 21205, USA.
Department of Molecular Biology and Genetics,
Johns Hopkins University School of Medicine,
Baltimore, MD 21205, USA.

*To whom correspondence should be addressed.
E-mail: jbradle7{at}jhmi.edu

Cosignatories: Martin Biel, Ludwig-Maximilians Universitat München, München, Germany; Elspeth Bruford, HUGO Nomenclature Committee, The Galton Laboratory, University College London; Tsung-Yu Chen, University of California, Davis, CA; Stuart Firestein, Columbia University, New York, NY; Sharona E. Gordon, University of Washington, Seattle, WA; Franz Hofmann, Universitat München, München, Germany; Jeffrey W. Karpen, University of Colorado Health Sciences Center, Denver, CO; U. Benjamin Kaupp, Forschungszentrum Jülich, Jülich, Germany; Richard H. Kramer, University of California, Berkeley, CA; Emily R. Liman, University of Southern California, Los Angeles, CA; Graeme Lowe, Monell Chemical Senses Center, Philadelphia, PA; Lois J. Maltais, MGI Nomenclature Committee, The Jackson Laboratory, Bar Harbor, ME; Peter Mombaerts, The Rockefeller University, New York, NY; Steven Munger, University of Maryland School of Medicine, Baltimore, MD; John Nagi, University of California, Berkeley, CA; Steven S. Siegelbaum, HHMI and Columbia University, New York, NY; William N. Zagotta, HHMI and University of Washington, Seattle, WA; Frank Zufall, University of Maryland School of Medicine, Baltimore, MD


This article has been cited by other articles:

(Search Google Scholar for Other Citing Articles)

International Union of Pharmacology. LI. Nomenclature and Structure-Function Relationships of Cyclic Nucleotide-Regulated Channels.
F. Hofmann, M. Biel, and U. B. Kaupp (2005).
Pharmacol. Rev. 57: 455-462    Full Text »    PDF »
PKA-Dependent and PKA-Independent Pathways for cAMP-Regulated Exocytosis.
S. Seino and T. Shibasaki (2005).
Physiol Rev 85: 1303-1342    Abstract »    Full Text »    PDF »
Effects of permeating ions and cGMP on gating and conductance of rod-type cyclic nucleotide-gated (CNGA1) channels.
J. Kusch, V. Nache, and K. Benndorf (2004).
J. Physiol. 560: 605-616    Abstract »    Full Text »    PDF »
Functional Role of hCNGB3 in Regulation of Human Cone CNG Channel: Effect of Rod Monochromacy-Associated Mutations in hCNGB3 on Channel Function.
A. Okada, H. Ueyama, F. Toyoda, S. Oda, W.-G. Ding, S. Tanabe, S. Yamade, H. Matsuura, I. Ohkubo, and K. Kani (2004).
Invest. Ophthalmol. Vis. Sci. 45: 2324-2332    Abstract »    Full Text »    PDF »
All-trans-retinal Is a Closed-state Inhibitor of Rod Cyclic Nucleotide-gated Ion Channels.
S. L. McCabe, D. M. Pelosi, M. Tetreault, A. Miri, W. Nguitragool, P. Kovithvathanaphong, R. Mahajan, and A. L. Zimmerman (2004).
J. Gen. Physiol. 123: 521-531    Abstract »    Full Text »    PDF »
Distinct Structural Determinants of Efficacy and Sensitivity in the Ligand-binding Domain of Cyclic Nucleotide-gated Channels.
E. C. Young and N. Krougliak (2004).
J. Biol. Chem. 279: 3553-3562    Abstract »    Full Text »    PDF »
International Union of Pharmacology. XLII. Compendium of Voltage-Gated Ion Channels: Cyclic Nucleotide-Modulated Channels.
F. Hofmann, M. Biel, and U. B. Kaupp (2003).
Pharmacol. Rev. 55: 587-589    Abstract »    Full Text »    PDF »
Pseudechetoxin Binds to the Pore Turret of Cyclic Nucleotide-gated Ion Channels.
R. L. Brown, L. L. Lynch, T. L. Haley, and R. Arsanjani (2003).
J. Gen. Physiol. 122: 749-760    Abstract »    Full Text »    PDF »
Functionally Important Calmodulin-binding Sites in Both NH2- and COOH-terminal Regions of the Cone Photoreceptor Cyclic Nucleotide-gated Channel CNGB3 Subunit.
C. Peng, E. D. Rich, C. A. Thor, and M. D. Varnum (2003).
J. Biol. Chem. 278: 24617-24623    Abstract »    Full Text »    PDF »
Calcium/Calmodulin Modulation of Olfactory and Rod Cyclic Nucleotide-gated Ion Channels.
M. C. Trudeau and W. N. Zagotta (2003).
J. Biol. Chem. 278: 18705-18708    Abstract »    Full Text »    PDF »
Selective heteromeric assembly of cyclic nucleotide-gated channels.
H. Zhong, J. Lai, and K.-W. Yau (2003).
PNAS 100: 5509-5513    Abstract »    Full Text »    PDF »
Importance of the CNGA4 channel gene for odor discrimination and adaptation in behaving mice.
K. R. Kelliher, J. Ziesmann, S. D. Munger, R. R. Reed, and F. Zufall (2003).
PNAS 100: 4299-4304    Abstract »    Full Text »    PDF »
Movement of the C-Helix during the Gating of Cyclic Nucleotide-Gated Channels.
M. Mazzolini, M. Punta, and V. Torre (2002).
Biophys. J. 83: 3283-3295    Abstract »    Full Text »    PDF »
NO upregulation of a cyclic nucleotide-gated channel contributes to calcium elevation in endothelial cells.
J. Zhang, S.-L. Xia, E. R. Block, and J. M. Patel (2002).
Am J Physiol Cell Physiol 283: C1080-1089    Abstract »    Full Text »    PDF »
Cyclic Nucleotide-Gated Ion Channels.
U. B. Kaupp and R. Seifert (2002).
Physiol Rev 82: 769-824    Abstract »    Full Text »    PDF »
Mechanism of calcium/calmodulin inhibition of rod cyclic nucleotide-gated channels.
M. C. Trudeau and W. N. Zagotta (2002).
PNAS 99: 8424-8429    Abstract »    Full Text »    PDF »



ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products

ADVERTISEMENT

Featured Jobs